# Root system architecture and drought adaptation: emerging tools and genetic insights

**Authors:** Vikender Kaur, Shashank Kumar Yadav, Bindu Yadav, Sukham Madaan, Munisha Kheralia, Viswanathan Chinnusamy

PMC · DOI: 10.3389/fpls.2026.1753086 · Frontiers in Plant Science · 2026-01-30

## TL;DR

This review explores how optimizing root system architecture can improve crop resilience to drought by integrating new phenotyping tools and genetic insights.

## Contribution

The paper bridges phenotyping advancements with molecular regulation to guide breeding for drought-tolerant crops.

## Key findings

- Non-invasive imaging and AI enable detailed analysis of root traits in real soil conditions.
- Key genetic loci like DRO1/qSOR1 and ABA-auxin interactions influence root architecture and drought response.
- Integration of phenotyping and genetics can improve breeding for climate-resilient crops.

## Abstract

Strategic optimisation of Root System Architecture (RSA) represents a critical frontier for stabilising crop productivity amid increasingly unpredictable moisture-deficit regimes. Understanding key root traits underlying effective drought response is necessary to harness the genetic diversity associated with root growth patterns and environmental adaptations. Many functionally significant root architectural traits have been reported, and the mechanistic importance of some of the anatomical ideotypes, such as the increased metaxylem vessel diameter to reduce axial hydraulic resistance to maintain leaf water potential and change in root growth angle to promote geotropic deep-soil moisture foraging, are discussed in this review. Despite the identification of these characteristics, the knowledge gap in their integration into predictive breeding frameworks remains. This review addresses this fragmentation by critically evaluating how the bottleneck of the ‘phenotyping’ process is being broken down through non-invasive high-throughput phenotyping modalities. Dynamic root-soil interfaces can be spatio-temporally quantified in situ using non-destructive technologies such as X-ray computed tomography and MRI, which can detect developmental plasticity masked by destructive sampling. Artificial Intelligence (AI), especially Convolutional Neural Networks, enables automated extraction of high-dimensional topological parameters from complex digital rhizograms. Present review integrates recent advances in phenotyping with molecular regulatory mechanisms, bridging two traditionally disparate fields. By focusing on the DRO1/qSOR1 loci and ABA-auxin crosstalk, we establish critical connections between molecular regulation and field-scale architectural performance. The resulting multi-scale roadmap may help in targeted selection of climate-resilient cultivars to maximize resource use efficiency.

## Linked entities

- **Genes:** CCDC80 (coiled-coil domain containing 80) [NCBI Gene 151887]

## Full-text entities

- **Genes:** CCDC80 (coiled-coil domain containing 80) [NCBI Gene 151887] {aka CL2, DRO1, LINC01279, SSG1, URB, okuribin}
- **Chemicals:** ABA (MESH:D000040), auxin (MESH:D007210)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12901346/full.md

## References

261 references — full list in the complete paper: https://tomesphere.com/paper/PMC12901346/full.md

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Source: https://tomesphere.com/paper/PMC12901346