# Indigenous Management Practices to Reduce Pests and Pathogens of Cash Crops in Agroforestry Systems

**Authors:** Marco Campera, Jake Skull, Lizzie H. Morton, Charlotte A. Grant, Diogo De Almeida Santos, Dylan Wimble, Aislinn Olthoff, Lilli Stenger, Joel Bowden‐Pickstock, I. Made Setiawan, I. Ketut Maliawan, Angel Sangha, Jessica Chavez, Mia Garza, Jenna Sleath‐Probets, Aikaterina Karageorgiadi, Made Dwi Sadnyana, I. Putu Leo Ardhiyanto, Michela Balestri, Andrew K. Jones, Sophie Manson, Muhammad Syirazi, Zefanya Ajiningrat Wibowo, Kuntayuni, Vincent Nijman, Matthew W. Bulbert, Vinni Jain, Desak Ketut Tristiana Sukmadewi

PMC · DOI: 10.1002/ece3.73094 · Ecology and Evolution · 2026-02-12

## TL;DR

Indigenous agroforestry practices in Bali show that crop diversity helps reduce pests and pathogens, with insecticides and fungicides having little effect.

## Contribution

The study reveals that crop richness, not agrochemicals, is key to reducing pest and pathogen impacts in agroforestry systems.

## Key findings

- Cocoa had the highest damage (63.9%) from black pod disease.
- Crop richness reduced some insect pests, suggesting natural pest control.
- Insecticides and fungicides had little impact on pest and pathogen infestations.

## Abstract

Indigenous farming practices (e.g., traditional agroforestry) can sustain high levels of biodiversity and ecosystem services (e.g., natural pest and pathogen control) and can be sustainable in the long term, especially if integrated with innovation and technology. We investigate the factors influencing pests and pathogen impact on agroforestry practices in Indigenous communities in Bali, Indonesia. We collected data via 100 plots with different compositions of crops in both community forests (where the use of agrochemicals is precluded by social rules) and polyculture (with no limitation on the use of agrochemicals). For each plot, we obtained a score of infestation for four cash crops (banana, coffee, cacao, and vanilla) by calculating the proportion of plants affected and giving a percentage score of infestation. Analysis was performed via generalised additive models with crop richness, canopy cover, and agroforestry type as factors. The crop with highest damage was cocoa (63.9% plants affected by black pod disease) and we also recorded a widespread incidence of the vascular streak dieback (19.4% plants affected). Fusarium stem rot was the second highest damage in crops, with 30.0% of vanilla plants infected. Fusarium wilt affected 10.2% of banana plants and the coffee berry borer affected 9.7% of coffee plants. There were no differences in pest and pathogen incidence between community forest and polyculture, thus insecticides and fungicides had little to no impact on crop infestations. An increased crop richness favoured a reduction in some insect pests, suggesting a potential increase in natural pest control. Since insecticides and fungicides do not seem to have a significant impact in reducing pest and pathogen infestation (probably due to genetic variability and resistance of pests and pathogens), the most effective Indigenous practice is to diversify profits from different crops, thus buffering the negative effects of market fluctuations and yield loss.

The crop with the highest damages was cocoa (63.9% plants affected by black pod disease), followed by Fusarium stem rot was the second highest damage in crops (30.0% of vanilla plants infected). Insecticides and fungicides do not have a significant impact in reducing pest and pathogen infestation. The most effective indigenous practice is to diversify profits from different crops, thus buffering negative effects of market fluctuations and yield loss.

## Linked entities

- **Species:** Vanilla (taxon 51238)

## Full-text entities

- **Diseases:** Fusarium wilt (MESH:D060585), black pod disease (MESH:D055008)
- **Species:** Theobroma cacao (cacao, species) [taxon 3641], Musa acuminata (banana, species) [taxon 4641], Vanilla (genus) [taxon 51238]

## Full text

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## Figures

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## References

97 references — full list in the complete paper: https://tomesphere.com/paper/PMC12900620/full.md

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Source: https://tomesphere.com/paper/PMC12900620