# Inhibition of Histone Lysine Acetyltransferases by Coenzyme A Analogs

**Authors:** Faidra Voukia, Nurgül Bilgin, Steffen Bundgaard Andersen, Jasmin Mecinović

PMC · DOI: 10.3390/molecules31030477 · Molecules · 2026-01-29

## TL;DR

Researchers designed new inhibitors for enzymes that modify proteins, showing promising results for biomedical applications.

## Contribution

The study introduces functionalized coenzyme A analogs as potent and selective inhibitors of human histone lysine acetyltransferases.

## Key findings

- Ketone-substituted coenzyme A was the most potent inhibitor of GCN5 and KAT8 with IC50 values of 10.9 μM and 13.6 μM.
- An acetamide-substituted coenzyme A efficiently inhibited HAT1 with an IC50 of 3.9 μM.
- S-functionalized coenzyme A analogs show significant potential as chemical probes for KATs.

## Abstract

Histone lysine acetylation is a widespread posttranslational modification, essential for vital functions in eukaryotic organisms. Histone lysine acetyltransferases (KATs) employ acetyl-coenzyme A as a universal acetyl donor for acetylation of lysine residues in histone and non-histone proteins. Despite the biomedicinal importance of modulation of the KAT activity, application of the acetyl-coenzyme A cosubstrate structure for the design of potent and selective inhibitors has been underexplored. Here, we developed functionalized coenzyme A analogs as inhibitors against human histone lysine acetyltransferases GCN5, KAT8, and HAT1. In contrast to the unmodified coenzyme A, which was found to be a poor inhibitor of GCN5 and KAT8 (IC50 > 150 μM), we showed that a ketone-substituted coenzyme A was the most potent inhibitor of GCN5 and KAT8 (IC50 = 10.9 μΜ and 13.6 μΜ, respectively). Coenzyme A and an acetamide-substituted coenzyme A efficiently inhibited HAT1 (IC50 = 7.3 μΜ and IC50 = 3.9 μΜ, respectively). Our work demonstrates that human KATs can be efficiently and selectively inhibited by S-functionalized coenzyme A, the results exhibiting significant potential towards development of highly active chemical probes for biomedically important KATs.

## Linked entities

- **Proteins:** KAT2A (lysine acetyltransferase 2A), KAT8 (lysine acetyltransferase 8), HAT1 (histone acetyltransferase 1)
- **Chemicals:** coenzyme A (PubChem CID 87642)

## Full-text entities

- **Genes:** HAT1 (histone acetyltransferase 1) [NCBI Gene 8520] {aka KAT1}, KAT8 (lysine acetyltransferase 8) [NCBI Gene 84148] {aka LIGOWS, MOF, MYST1, ZC2HC8, hMOF}, TSTD1 (thiosulfate sulfurtransferase like domain containing 1) [NCBI Gene 100131187] {aka KAT}, KAT2A (lysine acetyltransferase 2A) [NCBI Gene 2648] {aka GCN5, GCN5L2, PCAF-b, hGCN5}
- **Chemicals:** Coenzyme A Analogs (-), ketone (MESH:D007659), S (MESH:D013455), acetyl-coenzyme A (MESH:D000105), Coenzyme A (MESH:D003065)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

81 references — full list in the complete paper: https://tomesphere.com/paper/PMC12899889/full.md

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Source: https://tomesphere.com/paper/PMC12899889