# FLA1, Enhancing GA3 Contents in Flag Leaf Lamina Joint, Increases Flag Leaf Angle to Improve Outcross Rate and Hybrid Rice Seed Production

**Authors:** Zhiyao Dong, Dalu Li, Xiaoxiao Hu, Xuanchi Liu, Nuoya Fei, Guocan Wu, Erbao Liu, Xiaojing Dang, Siyuan Zeng, Yuzhu Chen, Delin Hong

PMC · DOI: 10.3390/plants15030446 · Plants · 2026-01-31

## TL;DR

This study identifies a gene that controls rice leaf angle, which can improve hybrid rice seed production through mechanization.

## Contribution

The study identifies FLA1 as a key gene influencing rice flag leaf angle through GA biosynthesis and molecular interactions.

## Key findings

- FLA1 is a major gene affecting flag leaf angle by modulating GA biosynthesis and cell morphology.
- The FLA1fla-R allele enhances GA production by upregulating CLA1 and GA20ox2.
- FLA1 interacts with ARP1, suggesting a role in auxin-related regulation of leaf angle.

## Abstract

Flag leaf angle (FLA) in rice (Oryza sativa L.) is one of the important traits affecting F1 seed production by mechanization. Here, we report the map-based cloning and functional characterization of the FLA1 (FLAG-LEAF-ANGLE 1) gene, which resides at a major-effect quantitative trait locus (QTL). Through cell morphological observations and exogenous hormone treatment assays, we demonstrate that gibberellin (GA) modulates rice FLA by altering both the number of cell layers and cell length. Combining genetic and molecular biological analyses with genetic complementation and gene overexpression assays, we elucidated and validated the biological function of FLA1. In addition, we found that FLA1 is constitutively expressed and encodes a protein localized to both the cell membrane and nucleus. Via RT-qPCR assays, we further demonstrated that the FLA1fla-R allele from the rice accession fla-R enhances GA biosynthesis by upregulating the expression of CLA1 and GA20ox2. Furthermore, yeast two-hybrid assays revealed that auxin-repressed protein 1 (ARP1) interacts with FLA1, suggesting a potential role of this interaction in the modulation of rice FLA. Collectively, our results demonstrate that optimizing rice FLA via molecular manipulation of FLA1 can resolve the problem of flag leaf shearing during F1 hybrid rice seed production without compromising F1 hybrid seed yield, thereby facilitating mechanized F1 hybrid rice seed production.

## Linked entities

- **Genes:** FLA1 (FASCICLIN-like arabinogalactan 1) [NCBI Gene 835667], SCARB1 (scavenger receptor class B member 1) [NCBI Gene 949], GA20OX2 (gibberellin 20 oxidase 2) [NCBI Gene 835256], PITX2 (paired like homeodomain 2) [NCBI Gene 5308]
- **Proteins:** AGA (aspartylglucosaminidase), PITX2 (paired like homeodomain 2)
- **Chemicals:** GA (PubChem CID 5360835), gibberellin (PubChem CID 522636)
- **Species:** Oryza sativa (taxon 4530)

## Full-text entities

- **Chemicals:** gibberellin (MESH:D005875), GA (MESH:D005708)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Oryza sativa (Asian cultivated rice, species) [taxon 4530]

## Full text

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## Figures

13 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12899354/full.md

## References

72 references — full list in the complete paper: https://tomesphere.com/paper/PMC12899354/full.md

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Source: https://tomesphere.com/paper/PMC12899354