# Identification of Key Bioactive Compounds of Medicine–Food Homologous Substances and Their Multi-Target Intervention Effects in Osteosarcoma Treatment

**Authors:** Jie Ren, Xue Zhang, Siyu Chen, Ruiming Liu, Pengcheng Yi, Shuang Liu

PMC · DOI: 10.3390/ijms27031360 · International Journal of Molecular Sciences · 2026-01-29

## TL;DR

This study identifies key bioactive compounds from food-medicine substances that could help treat osteosarcoma by targeting multiple genes and pathways.

## Contribution

The study introduces a novel approach combining transcriptomic data and computational screening to identify multi-target compounds from medicine–food homologous substances for osteosarcoma treatment.

## Key findings

- Eleven core compounds, including ellagic acid dihydrate, were identified as potential anti-osteosarcoma agents.
- Five key target genes (SOST, ACACB, TACR1, GRIN2B, MPO) and eight MFHs were linked to osteosarcoma pathways.
- Molecular docking and experiments confirmed the compounds' stability and therapeutic potential.

## Abstract

Osteosarcoma (OS), a highly aggressive bone malignancy, is hard to treat due to complex molecular mechanisms. This study aimed to identify key bioactive compounds from medicine–food homologous (MFH) substances for OS intervention. We analyzed GEO transcriptomic data to get 317 differentially expressed genes (DEGs), screened bioactive compounds from 106 MFH via dual databases, predicted compound–DEG protein interactions with GraphBAN, and filtered 11 core compounds through drug-likeness/toxicity evaluations. Regulatory networks identified 5 key target genes (SOST, ACACB, TACR1, GRIN2B, MPO), 10 key compounds (e.g., ellagic acid dihydrate) and 8 MFHs (e.g., Daidaihua). Molecular docking/MD confirmed stable complexes. GSEA/GSVA revealed pathway dysregulation (e.g., upregulated WNT signaling), and immune analysis showed altered infiltration of 5 cell subsets. 143B cell experiments and qRT-PCR validated findings. MFH-derived compounds, especially ellagic acid dihydrate, have multi-target anti-OS potential, laying a foundation for novel OS therapeutics.

## Linked entities

- **Genes:** SOST (sclerostin) [NCBI Gene 50964], ACACB (acetyl-CoA carboxylase beta) [NCBI Gene 32], TACR1 (tachykinin receptor 1) [NCBI Gene 6869], GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B) [NCBI Gene 2904], MPO (myeloperoxidase) [NCBI Gene 4353]
- **Chemicals:** ellagic acid dihydrate (PubChem CID 16760409)
- **Diseases:** osteosarcoma (MONDO:0002623)

## Full-text entities

- **Genes:** SOST (sclerostin) [NCBI Gene 50964] {aka CDD, DAND6, SOST1, VBCH}, MPO (myeloperoxidase) [NCBI Gene 4353], GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B) [NCBI Gene 2904] {aka DEE27, EIEE27, GluN2B, MRD6, NMDAR2B, NR2B}, TACR1 (tachykinin receptor 1) [NCBI Gene 6869] {aka NK1R, NKIR, SPR, TAC1R}, ACACB (acetyl-CoA carboxylase beta) [NCBI Gene 32] {aka ACACbeta, ACC-beta, ACC2, ACCB, ACCbeta, HACC275}
- **Diseases:** OS (MESH:D012516), bone malignancy (MESH:D001859), toxicity (MESH:D064420)
- **Chemicals:** ellagic acid dihydrate (-)

## Full text

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## Figures

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## References

108 references — full list in the complete paper: https://tomesphere.com/paper/PMC12898791/full.md

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Source: https://tomesphere.com/paper/PMC12898791