# Artificial Intelligence-Enabled Integration Suggests TP53 Pathway Alterations as Prognostic Biomarkers in Populations with Disproportionate Health Burdens

**Authors:** Fernando C. Diaz, Brigette Waldrup, Francisco G. Carranza, Sophia Manjarrez, Enrique Velazquez-Villarreal

PMC · DOI: 10.3390/ijms27031607 · International Journal of Molecular Sciences · 2026-02-06

## TL;DR

This study explores how TP53 pathway changes may serve as prognostic markers in early-onset colorectal cancer, particularly in underrepresented Hispanic/Latino populations.

## Contribution

The study introduces AI-driven integration to identify TP53 pathway alterations as potential biomarkers in diverse ancestry groups.

## Key findings

- TP53 pathway alterations were common in both Hispanic/Latino and non-Hispanic White patients treated with FOLFOX.
- FOLFOX treatment was associated with distinct mutation patterns in late-onset colorectal cancer across ancestry groups.
- Missense mutations were the most frequent type of TP53 pathway alterations across all groups.

## Abstract

The incidence of early-onset colorectal cancer (EOCRC; <50 years) continues to increase, with the most rapid rises occurring among Hispanic/Latino (H/L) populations who remain underrepresented in molecular research. Because the TP53 signaling pathway is a key driver of colorectal tumorigenesis, this study aimed to clarify its prognostic significance in FOLFOX-treated EOCRC across ancestry groups. We analyzed 2515 colorectal cancer (CRC) cases (266 H/L, 2249 non-Hispanic White [NHW]) stratified by ancestry, age at onset, and FOLFOX exposure. Fisher’s exact, chi-square, and Kaplan–Meier’s analyses were applied, and multi-dimensional data integration was performed using AI-HOPE and AI-HOPE-TP53, conversational artificial intelligence platforms enabling natural language-driven exploration of clinical, genomic, and therapeutic features. TP53 pathway alterations were common in both H/L (85%) and NHW (83%) FOLFOX-treated patients. Among late-onset NHW cases, FOLFOX treatment was associated with higher TP53 mutation frequencies and lower ATM and CDKN2A mutation rates compared with untreated counterparts, while CHEK2 alterations were significantly less frequent in late-onset H/L patients. Missense mutations were the predominant alteration type across groups. These findings suggest that TP53 pathway alterations may be associated with ancestry- and treatment-specific clinical patterns in EOCRC and illustrate how AI-enabled integrative analytic frameworks can facilitate hypothesis generation and prioritize candidate biomarkers for future validation in precision oncology.

## Linked entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157], ATM (ATM serine/threonine kinase) [NCBI Gene 472], CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029], CHEK2 (checkpoint kinase 2) [NCBI Gene 11200]
- **Chemicals:** FOLFOX (PubChem CID 135659064)
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** CHEK2 (checkpoint kinase 2) [NCBI Gene 11200] {aka CDS1, CHK2, HuCds1, LFS2, PP1425, RAD53}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}
- **Diseases:** CRC (MESH:D015179), H (MESH:D000848)
- **Chemicals:** FOLFOX (MESH:C410216)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12898670/full.md

## References

37 references — full list in the complete paper: https://tomesphere.com/paper/PMC12898670/full.md

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Source: https://tomesphere.com/paper/PMC12898670