# The Effects of Variant Allele Frequency for EGFR Mutation on Early Tumor Shrinkage and Deepness of Response to Osimertinib in Patients with Metastatic Non-Small Cell Lung Cancer: An Exploratory Analysis

**Authors:** Giuseppe Bronte, Aldo Carnevale, Antonella Ciancetta, Donato Michele Cosi, Cristina Fragale, Stefania Ciarrocchi, Maria Luisa Di Guglielmo, Giovanna Tinelli, Noemi Mindicini, Lucia Battara, Lucilla D’Abundo, Elisa Callegari, Giovanni Lanza, Deborah Gabriele, Roberta Gafà, Alessandra Santini, Massimo Negrini, Luana Calabrò

PMC · DOI: 10.3390/jcm15030944 · Journal of Clinical Medicine · 2026-01-24

## TL;DR

This study explores how the frequency of EGFR mutations affects tumor shrinkage and response to osimertinib in lung cancer patients.

## Contribution

The study identifies new compound EGFR mutations and evaluates their impact on osimertinib response.

## Key findings

- Corrected variant allele frequency (cVAF) was not significantly correlated with early tumor shrinkage or deepness of response.
- Two previously unreported compound EGFR mutations were identified and structurally characterized.
- Higher cVAF was associated with longer survival, though not statistically significant.

## Abstract

Background: Several studies evaluated the role of variant allele frequency (VAF) as a clinical decision-making tool for targeted therapies. However, its predictive role for treatment response in epidermal growth factor receptor (EGFR)-mutated non-small cell lung cancer (NSCLC) remains debated. This study investigates the relationship between VAF and early tumor shrinkage (ETS) and deepness of response (DpR). We also explored the impact of previously undescribed compound uncommon EGFR mutations on osimertinib activity. Methods: We retrospectively analyzed data from patients with advanced EGFR-mutated NSCLC, treated with osimertinib. VAF was obtained through NGS. We calculated corrected VAF (cVAF) based on the percentage of tumor cells. ETS and DpR were assessed according to RECIST 1.1 criteria. Molecular modeling was performed to predict the impact of novel compound EGFR mutations on osimertinib binding and EGFR protein structure. Results: We included 16 patients, who met the eligibility criteria. We found no significant correlation between cVAF and ETS or DpR, suggesting that cVAF may not have a direct effect on early or late tumor response to osimertinib. Median cVAF was 14%. Median progression-free survival and overall survival were longer in patients with higher VAF, even though they were not statistically significant. We identified two previously unreported compound EGFR mutations: N771Y + L858R and L718V + K713R + L858R. Conclusions: This study demonstrates that cVAF of EGFR mutations is not significantly associated with ETS or DpR during osimertinib in mNSCLC patients. Survival does not appear to be influenced by cVAF either. The identification and structural characterization of novel compound EGFR uncommon mutations may explain the benefit experienced by patients.

## Linked entities

- **Genes:** EGFR (epidermal growth factor receptor) [NCBI Gene 1956]
- **Chemicals:** osimertinib (PubChem CID 71496458)
- **Diseases:** non-small cell lung cancer (MONDO:0005233)

## Full-text entities

- **Genes:** EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}
- **Diseases:** NSCLC (MESH:D002289), Tumor (MESH:D009369)
- **Chemicals:** Osimertinib (MESH:C000596361)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** L718V, L858R, K713R, N771Y

## Full text

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## Figures

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## References

31 references — full list in the complete paper: https://tomesphere.com/paper/PMC12898104/full.md

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Source: https://tomesphere.com/paper/PMC12898104