# Microbiota-Derived Regulation of AhR and VDR Signaling in Intestinal Inflammation: Protective Roles of Prebiotics, Probiotics, and Postbiotics

**Authors:** Fu-Chen Huang

PMC · DOI: 10.3390/ijms27031295 · International Journal of Molecular Sciences · 2026-01-28

## TL;DR

This paper explores how gut microbes influence intestinal inflammation through AhR and VDR signaling, and evaluates the potential of prebiotics, probiotics, and postbiotics for treatment.

## Contribution

The paper introduces three testable models for AhR–VDR axis cooperation and evaluates the therapeutic potential of microbiota-derived interventions.

## Key findings

- Indoles and SCFAs modulate intestinal immunity via AhR and VDR signaling pathways.
- Prebiotics, probiotics, and postbiotics each have distinct mechanisms and limitations in regulating inflammation.
- Postbiotics offer standardized delivery but require formulation improvements for clinical use.

## Abstract

Microbiota-derived indoles and short-chain fatty acids (SCFAs) modulate intestinal immunity via the aryl hydrocarbon receptor (AhR) and vitamin D receptor (VDR). This review proposes an operational AhR–VDR axis—three testable models (sequential, parallel, reciprocal)—to explain how indoles (AhR) and SCFAs/vitamin D (VDR) may cooperate to drive IL-22–mediated repair, antimicrobial peptide production, autophagy, and tight-junction restoration. We critically evaluate prebiotics, probiotics, and postbiotics: prebiotics shift fermentation toward SCFAs but show context-dependent effects; probiotics can supply indole-type AhR ligands yet are strain-specific; postbiotics offer standardized ligand delivery but face formulation challenges. We distinguish Salmonella-specific findings (e.g., SCFA suppression of SPI-1) from general colitis data and prioritize molecular validation, temporal mapping, multi-omics responder stratification, and standardized postbiotic development for clinical translation.

## Linked entities

- **Proteins:** AHR (aryl hydrocarbon receptor), VDR (vitamin D receptor), IL22 (interleukin 22)
- **Chemicals:** indoles (PubChem CID 139191468)
- **Diseases:** colitis (MONDO:0005292)
- **Species:** Salmonella (taxon 590)

## Full-text entities

- **Genes:** VDR (vitamin D receptor) [NCBI Gene 7421] {aka NR1I1, PPP1R163}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, SPI1 (Spi-1 proto-oncogene) [NCBI Gene 6688] {aka AGM10, OF, PU.1, SFPI1, SPI-1, SPI-A}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}
- **Diseases:** Inflammation (MESH:D007249), colitis (MESH:D003092)
- **Chemicals:** Prebiotics (MESH:D056692), indoles (MESH:D007211), vitamin D (MESH:D014807), Postbiotics (-), SCFA (MESH:D005232)
- **Species:** Salmonella (genus) [taxon 590]

## Full text

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## References

109 references — full list in the complete paper: https://tomesphere.com/paper/PMC12898027/full.md

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Source: https://tomesphere.com/paper/PMC12898027