# Molecular dynamics analyses of CLDN15 pore size and charge selectivity

**Authors:** Sarah McGuinness, Pan Li, Ye Li, Shadi Fuladi, Sukanya Konar, Samaneh Sajjadi, Mohammed Sidahmed, Yueying Li, Le Shen, Fatemeh Khalili-Araghi, Christopher R. Weber

PMC · DOI: 10.1085/jgp.202513824 · The Journal of General Physiology · 2026-02-12

## TL;DR

The study explores how a specific residue in CLDN15 affects ion transport through tight junctions, offering insights for therapeutic applications.

## Contribution

A reduced molecular dynamics model of CLDN15 reveals the dual role of D55 in ion selectivity and permeability.

## Key findings

- D55E mutation decreases charge selectivity and favors small ion permeability.
- D55N mutation reduces charge selectivity without altering size selectivity.
- D55 plays a dual role in shaping electrostatic and steric properties of the CLDN15 pore.

## Abstract

Cell culture and molecular dynamics simulations reveal the role of claudin-15 D55 residue in ion size and charge selectivity. A reduced model of claudin-15 offers novel insights into ion conductance, providing a valuable tool for therapeutic modulation of tight junctions.

Claudin-15 (CLDN15) molecules form channels that directly regulate cation and water transport. In the gastrointestinal tract, this transport indirectly impacts nutrient absorption. However, the mechanisms governing ion transport through these channels remain poorly understood. We addressed this question by building on our previous cell culture studies and an all-atom molecular dynamics simulation model of CLDN15. By mutating D55 to a bulkier glutamic acid or neutral amino acid asparagine, our in vitro measurements showed that the D55E mutation decreased charge selectivity and favored small ion permeability, while the D55N mutation led to reduced charge selectivity without markedly altering size selectivity. By establishing a simplified (reduced) CLDN15 molecular dynamics model that excludes nonessential transmembrane regions, we were able to probe how D55 modified cation dehydration, charge interaction, and permeability. These results provide novel insight into organization of the CLDN15 selectivity filter and suggest that D55 plays a dual role in shaping both electrostatic and steric properties of the pore, but its electrostatic role is more prominent in determining CLDN15 cation permeability. This knowledge can be used toward the development of effective strategies to modulate CLDN15 function. The experimental approach established can be further extended to study the function of other claudin channels. Together, these advancements will help us to modulate tight junctions to promote human health.

## Linked entities

- **Genes:** CLDN15 (claudin 15) [NCBI Gene 24146]
- **Proteins:** CLDN15 (claudin 15), CLDN15 (claudin 15)

## Full-text entities

- **Genes:** CLDN15 (claudin 15) [NCBI Gene 24146]
- **Chemicals:** glutamic acid (MESH:D018698), water (MESH:D014867), asparagine (MESH:D001216)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** D55

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12898017/full.md

## References

47 references — full list in the complete paper: https://tomesphere.com/paper/PMC12898017/full.md

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Source: https://tomesphere.com/paper/PMC12898017