# Berberine Ameliorates DSS-Induced Colitis via Regulation of Mucosal Barrier Homeostasis and Mucin-Degrading Microbiota

**Authors:** Yanli Chen, Yan Wang, Yanmin He, Lei Qiao, Weilong Dai, Yalin Liu, Xiaoxi Lu, Yujie Gan, Lu Sun, Mingzhi Yang, Yizhen Wang, Jie Fu, Mingliang Jin

PMC · DOI: 10.3390/ijms27031549 · International Journal of Molecular Sciences · 2026-02-04

## TL;DR

Berberine helps reduce colitis by improving gut barrier function and balancing gut microbes, offering potential as a functional food additive.

## Contribution

The study reveals how berberine's effects on mucin-degrading microbiota and barrier homeostasis contribute to its therapeutic potential for IBD.

## Key findings

- Berberine increases IgA-coated bacteria, Zg16, Reg3g, and Pla2g2a, supporting microbiota homeostasis.
- Akkermansia and Bacteroides-related mucin-SCFA metabolism underlie berberine's gut barrier benefits.
- Berberine shows promise as a functional food additive for managing inflammatory bowel disease.

## Abstract

Berberine, a benzyl isoquinoline alkaloid, is used in food for its diverse spectrum of biological activities. Inflammatory bowel disease (IBD) is a widespread condition characterized by frequent occurrence and limited therapeutic success. Berberine has been shown to alleviate colitis through enhancement of the intestinal barrier and modulation of gut microbial balance. However, the further mutualistic balance mechanism between microbes and the mucus of berberine in alleviating IBD still needs to be clarified. Our findings demonstrated a strong association between berberine’s therapeutic efficacy and alterations in the gut microbiota. This includes enhancements in the level of IgA-coated bacteria, Zg16, Reg3g, and Pla2g2a, all of which contribute to microbiota homeostasis. Moreover, the beneficial effect on gut barrier function of berberine was mostly attributed to Akkermansiam and Bacteriodes-associated mucin–SCFA metabolism. This study lays a critical groundwork for the development of berberine-based functional food additives that harness its nutraceutical potential.

## Linked entities

- **Genes:** ZG16 (zymogen granule protein 16) [NCBI Gene 653808], REG3G (regenerating family member 3 gamma) [NCBI Gene 130120], PLA2G2A (phospholipase A2 group IIA) [NCBI Gene 5320]
- **Chemicals:** Berberine (PubChem CID 2353)
- **Diseases:** Inflammatory bowel disease (MONDO:0005265), colitis (MONDO:0005292)
- **Species:** Akkermansia (taxon 239934), Bacteroides (taxon 816)

## Full-text entities

- **Genes:** Mucin [NCBI Gene 100508689], ZG16 (zymogen granule protein 16) [NCBI Gene 653808] {aka JCLN, JCLN1, ZG16A}, PLA2G2A (phospholipase A2 group IIA) [NCBI Gene 5320] {aka MOM1, PLA2, PLA2B, PLA2L, PLA2S, PLAS1}, REG3G (regenerating family member 3 gamma) [NCBI Gene 130120] {aka LPPM429, PAP IB, PAP-1B, PAP1B, PAPIB, REG III}
- **Diseases:** Colitis (MESH:D003092), IBD (MESH:D015212)
- **Chemicals:** Berberine (MESH:D001599), benzyl isoquinoline alkaloid (-), SCFA (MESH:D005232)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12897809/full.md

## References

59 references — full list in the complete paper: https://tomesphere.com/paper/PMC12897809/full.md

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Source: https://tomesphere.com/paper/PMC12897809