# Single-Cell Mapping Reveals MIF-Centered Immunoregulatory Networks in Colorectal Cancer

**Authors:** Marios Gkoris, Ilias Georgakopoulos-Soares, Apostolos Zaravinos

PMC · DOI: 10.3390/ijms27031496 · International Journal of Molecular Sciences · 2026-02-03

## TL;DR

This study maps cell interactions in colorectal cancer and finds that MIF signaling is central to immune regulation in the tumor environment.

## Contribution

The study identifies MIF-centered immunoregulatory networks as a key hub in colorectal cancer using single-cell analysis.

## Key findings

- MIF-CD74 signaling connects tumor cells with immune cells like T cells, B cells, and macrophages.
- CMS3 epithelial cells show strong interactions with SPP1+ macrophages and cytotoxic lymphocytes.
- MIF, CD74, CD44, and SPP1 are elevated in tumor tissues, linked to immune modulation pathways.

## Abstract

Colorectal cancer (CRC) progression is strongly shaped by the tumor microenvironment (TME), where complex interactions between epithelial, immune, and stromal cells orchestrate immune suppression and tumor evolution. To dissect these relationships at single-cell resolution, we analyzed CRC scRNA-seq datasets using Seurat for data integration and CellChat for ligand–receptor inference. We identified extensive cellular heterogeneity within the TME, dominated by CMS2/CMS3 epithelial states, SPP1+ tumor-associated macrophages, diverse T-cell subsets, and CXCR4+ B cells. Communication analysis revealed MIF-centered signaling—including MIF–CD74–CXCR4 and MIF–CD74–CD44—as the predominant axis linking tumor epithelial cells with T cells, B cells, and macrophage subpopulations. CMS3 epithelial cells displayed particularly strong connectivity to SPP1+ macrophages and cytotoxic lymphocytes through both MIF- and APP–CD74-mediated pathways. Differential gene expression confirmed elevated levels of MIF, CD74, CD44, and SPP1 in tumor tissues, while pathway enrichment analyses highlighted cytokine signaling, antigen presentation, and chemokine-regulated immune modulation as key biological processes. Collectively, our study provides a high-resolution map of CRC intercellular communication and identifies MIF-CD74-associated signaling as a central immunoregulatory hub with potential relevance for therapeutic targeting and biomarker development.

## Linked entities

- **Genes:** MIF (macrophage migration inhibitory factor) [NCBI Gene 4282], CD74 (CD74 molecule) [NCBI Gene 972], CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852], CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960], SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696], APP (amyloid beta precursor protein) [NCBI Gene 351]
- **Diseases:** colorectal cancer (MONDO:0005575), CRC (MONDO:0005575)

## Full-text entities

- **Genes:** Spp1 (secreted phosphoprotein 1) [NCBI Gene 20750] {aka 2AR, Apl-1, BNSP, BSPI, Bsp, ETA-1}, Cxcr4 (C-X-C motif chemokine receptor 4) [NCBI Gene 12767] {aka CD184, CXC-R4, CXCR-4, Cmkar4, LESTR, PB-CKR}, Mif (macrophage migration inhibitory factor (glycosylation-inhibiting factor)) [NCBI Gene 17319] {aka DER6, GIF, Glif}, Cd44 (CD44 antigen) [NCBI Gene 12505] {aka HERMES, Ly-24, Pgp-1}, Cd74 (CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)) [NCBI Gene 16149] {aka CLIP, DHLAG, HLADG, Ia-GAMMA, Ii}
- **Diseases:** CRC (MESH:D015179), tumor (MESH:D009369)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12897769/full.md

## References

61 references — full list in the complete paper: https://tomesphere.com/paper/PMC12897769/full.md

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Source: https://tomesphere.com/paper/PMC12897769