# PCIF1 Attenuates Type I Interferon Induction by Inhibiting IRF3 Activation in a Methyltransferase-Independent Manner

**Authors:** Ryoya Kano, Chihiro Oyama, Chihiro Ikeda, Akiko Inujima, Keiichi Koizumi, Shinichiro Akichika, Tsutomu Suzuki, Aki Tanaka, Yoshiaki Ohkuma, Yutaka Hirose

PMC · DOI: 10.3390/cells15030303 · Cells · 2026-02-05

## TL;DR

PCIF1 suppresses type I interferon responses by inhibiting IRF3 activation, independent of its RNA methyltransferase activity, offering new insights into antiviral immunity.

## Contribution

PCIF1's novel non-catalytic role in suppressing type I IFN induction is revealed, independent of its RNA methyltransferase activity.

## Key findings

- PCIF1 deficiency enhances poly(I:C)-induced type I IFN response and ISG expression.
- PCIF1 suppresses IFNB1 transcription by inhibiting IRF3 phosphorylation and nuclear translocation.
- PCIF1's suppressive function is independent of its RNA methyltransferase activity.

## Abstract

PCIF1 is primarily recognized as an RNA methyltransferase that mediates N6-methylation of cap-proximal adenosine (m6Am) and plays diverse roles in gene expression. In this study, we uncover a novel role for PCIF1 as a crucial negative regulator of type I interferon (IFN) induction, a pathway critical for antiviral immunity whose dysregulation leads to inflammatory and autoimmune diseases. We demonstrate that PCIF1 deficiency robustly enhances the poly(I:C)-induced type I IFN response, accompanied by augmented STAT1 activation and interferon-stimulated gene (ISG) expression. Mechanistically, PCIF1 suppresses IFNB1 transcription by attenuating IRF3 phosphorylation and nuclear translocation, as shown by increased nascent IFNB1 mRNA synthesis and promoter activity in PCIF1-deficient cells, without affecting the mRNA stability. Crucially, this suppressive function was independent of PCIF1’s canonical RNA methyltransferase activity, as both wild-type PCIF1 and a methyltransferase-inactive mutant effectively attenuated type I IFN induction. Collectively, our findings establish PCIF1 as a novel methyltransferase-independent suppressor of type I IFN responses, revealing its previously unrecognized non-catalytic function. This discovery offers critical insights into the multifaceted regulation of innate immunity and highlights PCIF1’s non-catalytic function as a promising therapeutic target for modulating antiviral responses and inflammatory diseases.

## Linked entities

- **Genes:** PCIF1 (phosphorylated CTD interacting factor 1) [NCBI Gene 63935], IFNB1 (interferon beta 1) [NCBI Gene 3456], IRF3 (interferon regulatory factor 3) [NCBI Gene 3661], STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772]
- **Chemicals:** poly(I:C) (PubChem CID 135618150)

## Full-text entities

- **Genes:** STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, PCIF1 (phosphorylated CTD interacting factor 1) [NCBI Gene 63935] {aka C20orf67, CAPAM, MT-A70, PPP1R121, hCAPAM, hPCIF1}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}
- **Diseases:** inflammatory and autoimmune diseases (MESH:D001327), inflammatory diseases (MESH:D007249)
- **Chemicals:** poly(I:C) (MESH:D011070)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12896973/full.md

## References

63 references — full list in the complete paper: https://tomesphere.com/paper/PMC12896973/full.md

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Source: https://tomesphere.com/paper/PMC12896973