FAIRer DNA sequence data with q2-ena-uploader: a QIIME 2 plugin for data deposition in the European Nucleotide Archive
Zuzana Sebechlebska, Michal Ziemski, Nicholas A. Bokulich
TL;DR
This paper introduces a new tool to simplify uploading DNA sequence data to a public archive.
Contribution
The novel contribution is a QIIME 2 plugin for automated validation and upload to the European Nucleotide Archive.
Findings
q2-ena-uploader automates validation and submission of sequence data.
The tool is open-source and integrates with QIIME 2 workflows.
Abstract
Technical hurdles are a significant barrier for deposition of next-generation sequence data in public repositories. We present q2-ena-uploader, a software package for automated validation and upload of sequence data. It is BSD-3-licensed and available at https://github.com/bokulich-lab/q2-ena-uploader.
Genes, proteins, chemicals, diseases, species, mutations and cell lines named across the full text — each resolved to its canonical identifier and authoritative record.
Click any figure to enlarge with its caption.
Figure 1Peer Reviews
No public reviews on file for this paper yet. If you reviewed it on a platform where reviews are public (OpenReview, ICLR, NeurIPS, ICML), you can paste yours below so the community can read it here.
Videos
No videos yet. Explain this paper in a talk, walkthrough, or lecture? Add one.
Taxonomy
TopicsGenomics and Phylogenetic Studies · Scientific Computing and Data Management · Genetics, Bioinformatics, and Biomedical Research