# Tmbim5 and Slc8b1 cooperate in tissue-specific mitochondrial calcium regulation in zebrafish

**Authors:** Iga Wasilewska, Łukasz Majewski, Dobrochna Adamek-Urbańska, Sofiia Baranykova, Paulina Castañeda-Tamez, Ilka Wittig, Matylda Macias, Aleksandra Szybińska, Axel Methner

PMC · DOI: 10.1038/s42003-025-09494-7 · 2026-01-08

## TL;DR

This study shows how Tmbim5 and Slc8b1 work together in zebrafish to control calcium in mitochondria, with different effects in brain and muscle tissues.

## Contribution

The study reveals that Tmbim5 functions as an auxiliary calcium efflux pathway cooperating with Slc8b1 in a tissue-specific manner.

## Key findings

- Tmbim5-deficient zebrafish showed growth impairment, muscle atrophy, and increased brain cell death.
- Tmbim5 and Slc8b1 cooperate in mitochondrial calcium regulation with tissue-specific effects in brain and muscle.
- Double knockouts of tmbim5/slc8b1 showed reduced calcium uptake and efflux with tissue-specific rescue and exacerbation of phenotypes.

## Abstract

Mitochondrial calcium homeostasis involves coordinated uptake via the mitochondrial calcium uniporter (MCU) and efflux through sodium-dependent NCLX (encoded by SLC8B1) and/or TMEM65. We investigated TMBIM5, a proposed bidirectional mitochondrial calcium/proton transporter, by generating zebrafish lacking tmbim5, slc8b1, plus tmbim5/mcu and tmbim5/slc8b1 double knockouts. Tmbim5-deficient fish exhibited growth impairment, muscle atrophy, and increased brain cell death. tmbim5/mcu double knockouts showed no additive effects, arguing against Tmbim5 functioning as an independent calcium uptake pathway. slc8b1 knockouts had no major phenotype but showed attenuated, although not abolished sodium-dependent mitochondrial calcium efflux. tmbim5/slc8b1 double knockouts showed altered mitochondrial calcium handling with reduced uptake and efflux. Remarkably, brain phenotypes were rescued while muscle dysfunction was exacerbated in double mutants, corresponding to restored mitochondrial membrane potential in brain tissue and decreased calcium levels in muscle. These findings suggest that TMBIM5 functions as an auxiliary calcium efflux pathway cooperating with NCLX in a tissue-specific manner.

Tmbim5 and Slc8b1 cooperate in tissue-specific mitochondrial Ca2+ regulation in zebrafish. Genetic analyses show that Tmbim5 is not an independent uptake pathway but acts as an auxiliary Ca2+ efflux mechanism with distinct roles in brain and muscle.

## Linked entities

- **Genes:** GHITM (growth hormone inducible transmembrane protein) [NCBI Gene 27069], SLC8B1 (solute carrier family 8 member B1) [NCBI Gene 80024], MCU (mitochondrial calcium uniporter) [NCBI Gene 90550], TMEM65 (transmembrane protein 65) [NCBI Gene 157378]
- **Species:** Danio rerio (taxon 7955)

## Full-text entities

- **Genes:** tmem65 (transmembrane protein 65) [NCBI Gene 100005403] {aka zgc:194294}, slc8b1 (solute carrier family 8 member B1) [NCBI Gene 560601], mcu (mitochondrial calcium uniporter) [NCBI Gene 768182] {aka ccdc109a, wu:fi24a01, zgc:153607}
- **Diseases:** growth impairment (MESH:D006130), muscle dysfunction (MESH:D009135), muscle atrophy (MESH:D009133)
- **Chemicals:** tmbim5 (-), calcium (MESH:D002118), sodium (MESH:D012964)
- **Species:** Danio rerio (leopard danio, species) [taxon 7955]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12894878/full.md

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Source: https://tomesphere.com/paper/PMC12894878