# Structural basis for late maturation steps of mitochondrial respiratory chain complex IV within the human respirasome

**Authors:** Minh Duc Nguyen, Ana Sierra-Magro, Vivek Singh, Anas Khawaja, Alba Timón-Gómez, Antoni Barrientos, Joanna Rorbach

PMC · DOI: 10.1038/s41467-025-68274-3 · Nature Communications · 2026-01-10

## TL;DR

This study reveals how the final steps of a key mitochondrial complex, CIV, mature within a larger supercomplex called the respirasome, using a placeholder protein to ensure correct assembly.

## Contribution

The paper identifies HIGD2A as a placeholder in CIV that is replaced by NDUFA4 during the final maturation step of the respirasome.

## Key findings

- Respirasome biogenesis concludes with the final maturation of CIV while it is associated with CI and CIII₂.
- HIGD2A acts as a placeholder in CIV and is replaced by NDUFA4 during the last step of assembly.
- Defects in CIV assembly, including NDUFA4 deficiencies, are linked to severe neurological disorders.

## Abstract

The mitochondrial respiratory chain comprises four multimeric complexes (CI-CIV) that drive oxidative phosphorylation by transferring electrons to oxygen and generating the proton gradient required for ATP synthesis. These complexes can associate into supercomplexes (SCs), such as the CI + CIII₂ + CIV respirasome, but how SCs form, by joining preassembled complexes or by engaging partially assembled intermediates, remains unresolved. Here, we use cryo-electron microscopy to determine high-resolution structures of native human CI + CIII₂ + CIV late-assembly intermediates. Together with biochemical analyses, these structures show that respirasome biogenesis concludes with the final maturation of CIV while it is associated with fully assembled CI and CIII₂. We identify HIGD2A as a placeholder factor within isolated and supercomplexed CIV that is replaced by subunit NDUFA4 during the last step of CIV and respirasome assembly. This mechanism suggests that placeholders such as HIGD2A act as molecular timers, preventing premature incorporation of NDUFA4 or its isoforms and ensuring the orderly progression of pre-SC particles into functional respirasomes. Since defects in CIV assembly, including NDUFA4 deficiencies, cause severe encephalomyopathies and neurodegenerative disorders, understanding the molecular architecture and assembly pathways of isolated and supercomplexed CIV offers insight into the pathogenic mechanisms underlying these conditions.

Mitochondrial respiration involves super-complexes whose assembly pathway is debated. Here, authors reveal structural intermediates showing that complex IV matures last, with HIGD2A acting as a placeholder before NDUFA4 completes respirasome assembly.

## Linked entities

- **Genes:** HIGD2A (HIG1 hypoxia inducible domain family member 2A) [NCBI Gene 192286], COXFA4 (cytochrome c oxidase associated subunit FA4) [NCBI Gene 4697]
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** HIGD2A (HIG1 hypoxia inducible domain family member 2A) [NCBI Gene 192286] {aka HIG2A, RCF1b}, COXFA4 (cytochrome c oxidase associated subunit FA4) [NCBI Gene 4697] {aka CI-9k, CI-MLRQ, MC4DN21, MISTR1, MLRQ, MRCAF1}
- **Diseases:** neurodegenerative disorders (MESH:D019636), NDUFA4 deficiencies (MESH:D007153), encephalomyopathies (MESH:D017237)
- **Chemicals:** ATP (MESH:D000255), oxygen (MESH:D010100), proton (MESH:D011522), respiratory chain complex IV (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12894743/full.md

## References

5 references — full list in the complete paper: https://tomesphere.com/paper/PMC12894743/full.md

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Source: https://tomesphere.com/paper/PMC12894743