# Encapsulated probiotics as antimicrobial agents: mechanisms and delivery strategies against multidrug-resistant pathogens

**Authors:** Ulpan Kart, Dinara Smagulova, Dana Khairetdinova, Aigul Raimbekova, Gonzalo Hap Hortelano

PMC · DOI: 10.3389/fcimb.2026.1738291 · Frontiers in Cellular and Infection Microbiology · 2026-01-29

## TL;DR

Encapsulated probiotics offer a promising alternative to antibiotics by improving their stability and effectiveness against drug-resistant bacteria.

## Contribution

This paper reviews mechanisms and delivery strategies for encapsulated probiotics to combat multidrug-resistant pathogens.

## Key findings

- Encapsulation with biopolymers enhances probiotic viability and stability under gastrointestinal stress.
- Advanced carriers like PLGA and Eudragit® enable controlled delivery and protection in various applications.
- Multi-strain and synbiotic formulations, along with multi-omics tools, are key for clinical translation.

## Abstract

The rapid escalation of antimicrobial resistance (AMR) has rendered many conventional antibiotics ineffective, emphasizing the need for alternative therapeutic approaches. Probiotics have emerged as promising biotherapeutic agents capable of inhibiting multidrug-resistant (MDR) pathogens through diverse mechanisms, including secretion of antimicrobial metabolites (bacteriocins, organic acids, short-chain fatty acids, and hydrogen peroxide), competitive exclusion, quorum-sensing interference, and immune modulation. However, their clinical application is limited by poor stability under environmental and gastrointestinal stressors. Encapsulation technologies, particularly those employing natural biopolymers such as alginate, chitosan, pectin, carrageenan, and gelatin, have substantially improved probiotic viability, storage stability, and site-specific release. Recent advances in semi-synthetic and synthetic carriers, including PLGA, PVA, Eudragit®, and hybrid nanofiber systems, have further enabled controlled delivery and synergistic protection in intestinal, topical, and food-based applications. Collectively, encapsulated probiotics represent a potent strategy for combating AMR by enhancing antimicrobial efficacy and therapeutic consistency. Future research should focus on optimizing encapsulation parameters, integrating multi-strain and synbiotic formulations, and employing multi-omics tools to translate laboratory findings into standardized clinical interventions.

## Linked entities

- **Chemicals:** hydrogen peroxide (PubChem CID 784), alginate (PubChem CID 5102882), chitosan (PubChem CID 129662530), pectin (PubChem CID 441476), PLGA (PubChem CID 36797), PVA (PubChem CID 11199), Eudragit® (PubChem CID 6658)

## Full-text entities

- **Chemicals:** PLGA (MESH:D000077182), short-chain fatty acids (MESH:D005232), hydrogen peroxide (MESH:D006861), organic acids (-), carrageenan (MESH:D002351), alginate (MESH:D000464), chitosan (MESH:D048271), pectin (MESH:D010368), Eudragit (MESH:C038300), PVA (MESH:C063253)

## Full text

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## Figures

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## References

88 references — full list in the complete paper: https://tomesphere.com/paper/PMC12894281/full.md

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Source: https://tomesphere.com/paper/PMC12894281