# An inflammatory and quiescent HSC subpopulation expands with age in humans

**Authors:** Ksenia R. Safina, Basit Salik, Dylan Kotliar, Michelle Curtis, Jonathan D. Good, Chen Weng, Shawn David, Soumya Raychaudhuri, Antonia Kreso, Jennifer J. Trowbridge, Vijay G. Sankaran, Peter van Galen

PMC · DOI: 10.1186/s13059-026-03936-z · 2026-01-16

## TL;DR

The study finds an inflammatory and inactive stem cell subgroup in blood that grows with age in humans, offering a new target for anti-aging research.

## Contribution

A unified gene expression map of aging hematopoietic stem cells reveals a novel inflammatory and quiescent subpopulation linked to aging.

## Key findings

- Integrated single-cell datasets show HSC heterogeneity and age-related changes.
- An inflammatory and quiescent HSC subpopulation expands with age.
- This subpopulation is marked by TNF/NFκB and AP-1 pathway activation.

## Abstract

Aging of the blood system impacts systemic health and can be traced to hematopoietic stem cells (HSCs). Despite multiple reports on human HSC aging, a unified map detailing their molecular age-related changes is lacking. We developed a consensus map of gene expression in HSCs by integrating seven single-cell datasets. This map reveals previously unappreciated heterogeneity within the HSC population. It also links inflammatory pathway activation (TNF/NFκB, AP-1) and quiescence within a single gene expression program. This program dominates an inflammatory HSC subpopulation that increases with age, highlighting a potential target for further experimental studies and anti-aging interventions.

The online version contains supplementary material available at 10.1186/s13059-026-03936-z.

## Linked entities

- **Genes:** TNF (tumor necrosis factor) [NCBI Gene 7124], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353]

## Full-text entities

- **Genes:** JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3726] {aka AP-1}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** inflammatory (MESH:D007249)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12892447/full.md

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Source: https://tomesphere.com/paper/PMC12892447