# Functional characterization of BrPHD58, an Alfin-like PHD finger protein from Brassica rapa, reveals its negative role in salt stress tolerance in Arabidopsis thaliana

**Authors:** Intikhab Alam, Khadija Batool, Hantao Ge, Hakim Manghwar, Naveed Ur Rehman, Fang Qiao, Hui-Cong Wang

PMC · DOI: 10.3389/fpls.2026.1749944 · 2026-01-28

## TL;DR

A plant protein called BrPHD58 from Brassica rapa reduces salt stress tolerance in Arabidopsis thaliana, suggesting it negatively affects plant survival under salty conditions.

## Contribution

This study identifies BrPHD58 as a negative regulator of salt stress tolerance in transgenic Arabidopsis.

## Key findings

- BrPHD58 localizes to the nucleus and reduces seedling survival and root growth under salt stress.
- Overexpression of BrPHD58 downregulates key salt-responsive genes like AtRD22, AtRD29A, and AtLEA14.
- Transgenic plants with BrPHD58 show decreased salt stress tolerance compared to wild-type plants.

## Abstract

The plant homeodomain (PHD) finger constitutes a subgroup of transcription factors that contribute to the coordination of plant growth, morphogenesis, and adaptation to environmental stress mechanisms. In this study, we identified and functionally characterized the BrPHD58 gene from Brassica rapa. Using sequence analysis, subcellular localization of BrPHD58–GFP fusion proteins, and transgenic Arabidopsis thaliana lines ectopically expressing BrPHD58, we investigated its role in salt stress responses, including seedling phenotypes and expression of salt-responsive genes. Subcellular localization analysis indicated that BrPHD58 predominantly accumulates within the nuclear compartment. Ectopic expression of BrPHD58 in A. thaliana significantly reduced seedling survival rates and root lengths under varying concentrations of NaCl compared to wild-type (WT) plants. Under soil-grown conditions, transgenic lines overexpressing BrPHD58 exhibited markedly decreased tolerance to salt stress. Moreover, ectopic expression of BrPHD58 led to a down regulation of key salt-responsive genes, AtRD22, AtRD29A, and AtLEA14, under salt stress conditions. Collectively, all these findings indicate that BrPHD58 acts as a negative modulator of salt stress tolerance in transgenic plants. Further investigation involving the development and analysis of BrPHD58 loss-of-function mutants in B. rapa is necessary to fully elucidate its physiological role in salinity adaptation.

## Linked entities

- **Genes:** RD22 (BURP domain-containing protein) [NCBI Gene 832636]
- **Chemicals:** NaCl (PubChem CID 5234)
- **Species:** Brassica rapa (taxon 3711), Arabidopsis thaliana (taxon 3702)

## Full-text entities

- **Genes:** RD22 (BURP domain-containing protein) [NCBI Gene 832636] {aka ATRD22, RESPONSIVE TO DESSICATION 22, T14C9.150, T14C9_150}
- **Chemicals:** salt (MESH:D012492), NaCl (MESH:D012965)
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Rapa (genus) [taxon 644105], Brassica rapa (field mustard, species) [taxon 3711]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12892343/full.md

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Source: https://tomesphere.com/paper/PMC12892343