# SRSF3-TRIM28-MDC1 prevents DNA damage caused by R-loops in fatty liver disease in mice

**Authors:** Panyisha Wu, Manasi Das, Yanting Wang, Yichun Ji, Yuli Wu, Deepak Kumar, Lily J. Jih, Nicholas J.G. Webster

PMC · DOI: 10.1172/jci.insight.188629 · JCI Insight · 2026-01-09

## TL;DR

This study shows that the splicing factor SRSF3 prevents DNA damage in the liver, and its loss contributes to fatty liver disease and liver cancer.

## Contribution

The study identifies SRSF3 as a novel protector against DNA damage in liver disease by preventing R-loop accumulation.

## Key findings

- SRSF3 deletion in hepatocytes causes R-loop accumulation and DNA damage.
- Preventing SRSF3 degradation protects against DNA damage in MASH.
- SRSF3 forms a complex with TRIM28 and MDC1 to repair DNA damage.

## Abstract

Serine-rich splicing factor 3 (SRSF3) is crucial for the metabolic functions of the liver. The genetic deletion of SRSF3 in mouse hepatocytes impairs hepatic lipid and glucose metabolism and leads to fibrosis and formation of hepatocellular adenoma that progresses to hepatocellular carcinoma. SRSF3 protein is proteosomally degraded in metabolic-dysfunction associated fatty liver disease (MAFLD) and metabolic-dysfunction-associated steatohepatitis (MASH). We show here that depleting SRSF3 protein in hepatocytes promoted R-loop accumulation and increased DNA damage in the liver. Prevention of SRSF3 degradation in vivo protected hepatocytes from DNA double-strand breaks in mice with MASH. This protection extended to other DNA-damaging agents such as camptothecin, palmitic acid, or hydrogen peroxide when tested on HepG2 cells in vitro. SRSF3 interacted with TRIM28 and MDC1, which are components of the ATM DNA-damage repair complex, and knockdown of any of these 3 proteins reduced the expression of the other 2 proteins, suggesting they form a functional complex. Lastly, by preventing degradation of SRSF3, we were able to reduce tumors in a diethyl-nitrosamine–induced (DEN-induced) model of cirrhotic HCC. These findings suggest that maintenance of SRSF3 protein stability is crucial for preventing DNA damage and protecting liver from early metabolic liver disease and progression to HCC.

In this paper, the authors showed that loss of a splicing factor SRSF3 causes formation of R-loops and DNA damage that ultimately leads to liver cancer.

## Linked entities

- **Genes:** SRSF3 (serine and arginine rich splicing factor 3) [NCBI Gene 6428], TRIM28 (tripartite motif containing 28) [NCBI Gene 10155], MDC1 (mediator of DNA damage checkpoint 1) [NCBI Gene 9656]
- **Proteins:** SRSF3 (serine and arginine rich splicing factor 3), TRIM28 (tripartite motif containing 28), MDC1 (mediator of DNA damage checkpoint 1)
- **Chemicals:** camptothecin (PubChem CID 2538), palmitic acid (PubChem CID 985), hydrogen peroxide (PubChem CID 784), diethyl-nitrosamine (PubChem CID 5921)
- **Diseases:** fatty liver disease (MONDO:0004790), hepatocellular carcinoma (MONDO:0007256), metabolic-dysfunction-associated steatohepatitis (MONDO:0007027)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Trim28 (tripartite motif-containing 28) [NCBI Gene 21849] {aka KAP-1, KRIP-1, MommeD9, Tif1b, Tif1beta}, Srsf3 (serine and arginine-rich splicing factor 3) [NCBI Gene 20383] {aka Sfrs3, X16}, Atm (ataxia telangiectasia mutated) [NCBI Gene 11920] {aka C030026E19Rik}, Mdc1 (mediator of DNA damage checkpoint 1) [NCBI Gene 240087] {aka 6820401C03, Nfbd1, mKIAA0170}
- **Diseases:** HCC (MESH:D006528), fibrosis (MESH:D005355), tumors (MESH:D009369), metabolic liver disease (MESH:D008107), MAFLD (MESH:D005234), hepatocellular adenoma (MESH:D018248)
- **Chemicals:** DEN (MESH:D004052), camptothecin (MESH:D002166), hydrogen peroxide (MESH:D006861), palmitic acid (MESH:D019308), lipid (MESH:D008055), glucose (MESH:D005947)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12890501/full.md

## References

72 references — full list in the complete paper: https://tomesphere.com/paper/PMC12890501/full.md

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Source: https://tomesphere.com/paper/PMC12890501