# Holotomography-Based, Label-Free Quantification of Cellular Dry Mass as a Biophysical Indicator of Microglial Aβ Phagocytosis during Senescence

**Authors:** Sunjeet Saha, Amarnath Singam, Melanie White, Colbey Kimbel, Nikita Gopakumar, Jeong Hee Kim, Jingchun Chen, Ashkan Salamat, Seungman Park

PMC · DOI: 10.21203/rs.3.rs-8690474/v1 · Research Square · 2026-02-02

## TL;DR

This study shows that measuring cell dry mass with holotomography can reveal how aging microglia lose their ability to clean up amyloid-beta, a key process in neurodegenerative diseases.

## Contribution

The study introduces label-free cellular dry mass as a novel biophysical indicator of microglial senescence and phagocytic dysfunction.

## Key findings

- Senescent microglia showed significantly lower dry mass and smaller cell size after Aβ treatment compared to controls.
- Cellular dry mass correlated strongly with phagocytic decline in senescent microglia.
- Nuclear size increased in senescent microglia following Aβ exposure.

## Abstract

Senescent microglia undergo significant molecular and biochemical changes associated with impaired phagocytosis of amyloid-β (Aβ), a process implicated in neurodegenerative disease progression. However, quantitative biophysical metrics capable of capturing this functional impairment—and thus elucidating the role of microglial dysfunction in disease progression—remain limited. In this study, we identify cellular dry mass, measured by label-free holotomography, in combination with cell and nuclear morphological features, as sensitive biophysical indicators of microglial senescence and phagocytic capacity. Microglial senescence was induced using optimized hydrogen peroxide (H2O2) treatment and validated through p21 and pRPS6 expression, and Raman spectroscopic signatures. Subsequently, phagocytosis assays were conducted following Aβ treatment. Results showed that dry mass showed a strong correlation with phagocytic decline in senescent cells. Senescent microglia treated with Aβ exhibited significantly lower dry mass and smaller cell size, but larger nuclear size, compared with Aβ-treated control microglia. These findings highlight dry mass as a robust, non-invasive biophysical indicator of microglial senescence and associated phagocytic function.

## Linked entities

- **Genes:** CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026], PRPS6 (Plastid ribosomal protein S6 small ribosomal subunit) [NCBI Gene 5005609]
- **Chemicals:** hydrogen peroxide (PubChem CID 784), Aβ (PubChem CID 10246829)

## Full-text entities

- **Genes:** APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}
- **Diseases:** neurodegenerative disease (MESH:D019636), dysfunction (MESH:D006331)
- **Chemicals:** H 2 O 2 (MESH:D006861)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12889830/full.md

## References

53 references — full list in the complete paper: https://tomesphere.com/paper/PMC12889830/full.md

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Source: https://tomesphere.com/paper/PMC12889830