# Co-selection of genetic antibiotic resistance in Streptococcus pneumoniae after repeated azithromycin mass drug administrations in Niger

**Authors:** Armin Hinterwirth, Cindi Chen, Daisy Yan, Lina Zhong, Zhaoxia Zhou, YuHeng Liu, Jeremy Keenan, Kieran S. O'Brien, Elodie Lebas, Travis C. Porco, Thomas M. Lietman, Thuy Doan

PMC · DOI: 10.1128/aac.01562-25 · Antimicrobial Agents and Chemotherapy · 2025-12-23

## TL;DR

Repeated azithromycin use in Niger led to increased genetic resistance in Streptococcus pneumoniae to multiple antibiotics.

## Contribution

This study demonstrates co-selection of resistance to multiple antibiotics due to repeated azithromycin mass drug administrations.

## Key findings

- Genetic resistance to macrolide antibiotics was detected in S. pneumoniae after repeated azithromycin use.
- Resistance to tetracycline and trimethoprim-sulfamethoxazole also increased in treated communities.
- The study highlights the risk of antibiotic resistance spread through mass drug administration programs.

## Abstract

The spread of antibiotic resistance is a major concern in the setting of azithromycin mass drug distribution for childhood mortality. We performed long-read whole-genome sequencing and phenotypic resistance analysis on Streptococcus pneumoniae isolated from the nasopharynx of Nigerien children from communities treated with either six twice-yearly azithromycin distributions or placebo. Here, we showed that co-selection for macrolide, tetracycline, and trimethoprim-sulfamethoxazole genetic resistance was detected with repeated azithromycin mass drug distributions.

This study is registered with ClinicalTrials.gov as NCT02047981.

## Linked entities

- **Chemicals:** azithromycin (PubChem CID 447043), tetracycline (PubChem CID 54675776), trimethoprim-sulfamethoxazole (PubChem CID 358641)
- **Species:** Streptococcus pneumoniae (taxon 1313)

## Full-text entities

- **Chemicals:** trimethoprim-sulfamethoxazole (MESH:D015662), macrolide (MESH:D018942), azithromycin (MESH:D017963), tetracycline (MESH:D013752)
- **Species:** Streptococcus pneumoniae (species) [taxon 1313]

## Full text

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## Figures

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## References

8 references — full list in the complete paper: https://tomesphere.com/paper/PMC12888896/full.md

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Source: https://tomesphere.com/paper/PMC12888896