# Severe COVID‐19 Unveils Atypical Familial Hemophagocytic Lymphohistiocytosis due to a Novel Homozygous PRF1 Variant

**Authors:** Nasimeh Vatandoost, Mohsen Jari, Mansour Salehi

PMC · DOI: 10.1155/crii/3879317 · Case Reports in Immunology · 2026-02-10

## TL;DR

A rare PRF1 gene variant was found in a child with severe complications from COVID-19 and other infections, revealing a genetic condition linked to family history.

## Contribution

A novel homozygous PRF1 variant is identified as a cause of atypical familial hemophagocytic lymphohistiocytosis triggered by SARS-CoV-2.

## Key findings

- A novel PRF1 variant was identified through whole-exome sequencing in a child with severe disease.
- The PRF1 variant was inherited from asymptomatic parents and predicted to be harmful.
- Severe complications and death occurred despite treatment, highlighting the role of viral triggers in revealing genetic conditions.

## Abstract

We report a novel homozygous PRF1 variant, PRF1 (NM_001083116.3):c.343G > A (p.Glu115Lys), identified by whole‐exome sequencing (WES) in an 11‐year‐old girl with atypical familial hemophagocytic lymphohistiocytosis (FHL). The variant, inherited from asymptomatic heterozygous parents, was absent or extremely rare in population databases and was predicted to be deleterious by multiple in silico tools. Born to consanguineous parents, the patient presented with recurrent fever, pancytopenia, and multiorgan failure following SARS‐CoV‐2 infection, further complicated by Epstein–Barr virus (EBV) and cytomegalovirus (CMV) coinfections. Despite intensive immunosuppressive therapy, she developed seizures, an intracranial hemorrhage, and died at age 11. A striking family history of unexplained febrile deaths in infancy and childhood strongly supported autosomal recessive inheritance. It emphasizes the role of viral triggers, especially COVID‐19, in revealing genetic predispositions and underscores the importance of genetic screening in atypical cases.

## Linked entities

- **Genes:** PRF1 (perforin 1) [NCBI Gene 5551]
- **Diseases:** COVID-19 (MONDO:0100096), familial hemophagocytic lymphohistiocytosis (MONDO:0009974), pancytopenia (MONDO:0001529), multiorgan failure (MONDO:0043726)

## Full-text entities

- **Genes:** PRF1 (perforin 1) [NCBI Gene 5551] {aka HPLH2, P1, PFP}
- **Diseases:** COVID-19 (MESH:D000086382), pancytopenia (MESH:D010198), febrile deaths (MESH:D003643), fever (MESH:D005334), intracranial hemorrhage (MESH:D020300), multiorgan failure (MESH:D051437), FHL (MESH:D051359), seizures (MESH:D012640), CMV (MESH:D003586)
- **Species:** Homo sapiens (human, species) [taxon 9606], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376]
- **Mutations:** c.343G > A

## Full text

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## Figures

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## References

31 references — full list in the complete paper: https://tomesphere.com/paper/PMC12887974/full.md

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Source: https://tomesphere.com/paper/PMC12887974