# Choosing the best route: Comparative optimization of wheat transformation methods for improving yield by targeting TaARE1-D with CRISPR/Cas9

**Authors:** Mumin Ibrahim Tek, Kubra Budak Tek, Pelin Sarikaya, Abdul Razak Ahmed, Hakan Fidan, Mohammad Irfan, Mohammad Irfan, Mohammad Irfan, Mohammad Irfan

PMC · DOI: 10.1371/journal.pone.0342491 · PLOS One · 2026-02-09

## TL;DR

Researchers improved wheat transformation methods using CRISPR/Cas9 to boost yield by targeting a gene called TaARE1-D, achieving much higher success rates than before.

## Contribution

A novel optimization of wheat transformation protocols using CRISPR/Cas9 targeting TaARE1-D to significantly enhance transformation efficiency and plant regeneration.

## Key findings

- Optimized transformation efficiencies reached 66.84% for immature embryos, 55.44% for callus, and 33.33% for in planta methods.
- Shortening the callus induction stage reduced regeneration time by one month without sacrificing efficiency.
- CRISPR/Cas9 knockout of TaARE1-D increased grain number, spike length, and thousand-grain weight in wheat.

## Abstract

Wheat (Triticum aestivum L.) is one of the most important crops worldwide, supplying a major share of calories and protein for the global population. Incorporating gene editing into breeding programs is critical to improve yield and stress tolerance, yet wheat remains difficult to transform and regenerate efficiently. These bottlenecks limit the full application of CRISPR/Cas9 for improvement yield in wheat. To address this, transformation parameters were optimized for three methods: immature embryo transformation, callus transformation, and injection-based in planta transformation. Systematic optimization of Agrobacterium strain, bacterial density, acetosyringone concentration, and incubation conditions resulted in substantially improved transformation success. Efficiencies of 66.84% for immature embryos, 55.44% for callus, and 33.33% for in planta transformation were achieved, representing more than tenfold increase compared with previously reported rate of ~3%. A key innovation was the shortening of the callus induction stage for immature embryos, reducing the time required for plant regeneration by approximately one month while maintaining high transformation efficiency. The protocols were validated through CRISPR/Cas9-mediated knockout of TaARE1-D, a negative regulator of nitrogen uptake and yield. Generated mutants exhibited increased grain number, spike length, grain length, and thousand-grain weight, as well as the characteristic stay-green phenotype associated with loss of TaARE1-D function. The optimized protocols provide robust platforms to accelerate gene-editing in wheat to increase yield and stress-tolerance.

## Linked entities

- **Species:** Triticum aestivum (taxon 4565)

## Full-text entities

- **Chemicals:** acetosyringone (MESH:C051667), nitrogen (MESH:D009584)
- **Species:** Agrobacterium (genus) [taxon 357], Triticum aestivum (bread wheat, species) [taxon 4565]

## Full text

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## Figures

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## References

33 references — full list in the complete paper: https://tomesphere.com/paper/PMC12885284/full.md

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Source: https://tomesphere.com/paper/PMC12885284