# Role of DNA methylation in regulating inflammatory cytokine expression in neonates with late-onset sepsis

**Authors:** Saranya Sankar, Kathirvel Maruthai, Zachariah Bobby, Bethou Adhisivam

PMC · DOI: 10.3389/fimmu.2025.1613333 · Frontiers in Immunology · 2026-01-26

## TL;DR

This study shows that DNA methylation changes influence inflammatory responses in neonates with late-onset sepsis, offering potential for improved diagnosis and treatment.

## Contribution

The study identifies specific DNA methylation patterns linked to inflammatory cytokine expression in neonatal sepsis.

## Key findings

- LOS neonates showed hypomethylation in pro-inflammatory genes and hypermethylation in anti-inflammatory genes.
- Cytokine levels in LOS cases aligned with methylation patterns, showing elevated pro-inflammatory and reduced anti-inflammatory markers.
- Follow-up showed normalization of methylation and cytokine levels after antibiotic treatment.

## Abstract

Neonatal sepsis is a major health issue, particularly in resource-poor areas. This study aimed to assess the role of DNA methylation in regulating the inflammatory cytokine expression in late-onset neonatal sepsis (LOS).

We conducted a cross-sectional study comparing neonates with LOS (n=42) before and after 72 hours of antibiotic treatment (n=25) to healthy controls (HC) (n=42). We analysed DNA methylation patterns and inflammatory cytokine expression levels in both groups.

DNA methylation analysis revealed hypomethylation in pro-inflammatory genes and hypermethylation in anti-inflammatory genes in LOS neonates. These patterns were shifted in follow-up group, with significant changes in inflammatory marker levels, including TNF-α, IFN-γ, IL-10, and TGF-β. The gene expression results aligned with the DNA methylation findings, indicating that changes in the expression of inflammatory genes in late-onset neonatal sepsis (LONS) are influenced by DNA methylation. The results were further validated through an analysis of plasma cytokine levels. LOS cases showed elevated pro-inflammatory cytokines and reduced anti-inflammatory cytokines, except IL-10. In the follow-up group, pro-inflammatory cytokine levels decreased, while anti-inflammatory cytokines increased.

DNA methylation regulates the expression of inflammatory cytokine genes in late-onset neonatal sepsis. Understanding these molecular changes could lead to better diagnostic and therapeutic approaches for managing neonatal sepsis.

## Linked entities

- **Proteins:** TNF (tumor necrosis factor), IFNG (interferon gamma), IL10 (interleukin 10), TGFB1 (transforming growth factor beta 1)
- **Diseases:** neonatal sepsis (MONDO:0700217)

## Full-text entities

- **Genes:** IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}
- **Diseases:** LONS (MESH:D000071074), sepsis (MESH:D018805), inflammatory (MESH:D007249), inflammatory cytokine (MESH:D000080424)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12883824/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12883824/full.md

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Source: https://tomesphere.com/paper/PMC12883824