# A GluN2B disease-associated variant promotes the degradation of NMDA receptors via autophagy

**Authors:** Taylor M. Benske, Marnie P. Williams, Pei-Pei Zhang, Adrian J. Palumbo, Ting-Wei Mu

PMC · DOI: 10.1016/j.jbc.2026.111147 · The Journal of Biological Chemistry · 2026-01-10

## TL;DR

A disease-linked variant of GluN2B causes NMDA receptor degradation through autophagy, offering new insights into neurological disorders.

## Contribution

The study reveals a novel molecular mechanism for ER-to-lysosome degradation of NMDAR variants involving autophagy and the LIR motif.

## Key findings

- The R519Q GluN2B variant is retained in the ER and degraded via the autophagy-lysosomal pathway.
- The LIR motif in GluN2B facilitates autophagic clearance of the variant.
- The ER-phagy receptor CCPG1 recognizes the variant, and the LIR domain enhances this interaction.

## Abstract

N-methyl-D-aspartate receptors (NMDARs) are essential for excitatory neurotransmission, and missense mutations can severely disrupt their function. Pathogenic variants often lead to proteostasis defects, including improper folding, impaired assembly, and reduced trafficking to the plasma membrane, ultimately compromising the physiological function of NMDARs and thereby contributing to neurological diseases. However, mechanisms by which the proteostasis network recognizes and degrades aggregated, misfolded, and trafficking-deficient pathogenic NMDARs remain poorly understood. Here, we demonstrate that the R519Q GluN2B variant is retained in the endoplasmic reticulum (ER) and fails to traffic to the cell surface to form functional NMDARs. Pharmacological and genetic inhibition of autophagy resulted in the accumulation of this variant, indicating that it is degraded by the autophagy-lysosomal proteolysis pathway. Since the GluN2B subunit has a cytosolic LC3-interacting region (LIR) motif, disruption of the LIR motif via mutagenesis similarly impairs the autophagic clearance of this variant. Furthermore, we demonstrate that this variant is recognized by the ER-phagy receptor CCPG1 and that the LIR domain plays a facilitative role in strengthening this interaction. Our results provide a novel molecular mechanism for the ER-to-lysosome-associated degradation of NMDAR variants and identify a pathway for targeted therapeutic intervention for neurological disorders with dysfunctional NMDARs.

## Linked entities

- **Genes:** GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B) [NCBI Gene 2904], CCPG1 (cell cycle progression 1) [NCBI Gene 9236]
- **Proteins:** MAP1LC3A (microtubule associated protein 1 light chain 3 alpha)

## Full-text entities

- **Genes:** BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, GABARAP (GABA type A receptor-associated protein) [NCBI Gene 11337] {aka ATG8A, GABARAP-a, MM46}, DLG4 (discs large MAGUK scaffold protein 4) [NCBI Gene 1742] {aka MRD62, PSD95, SAP-90, SAP90}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, NEDD4 (NEDD4 E3 ubiquitin protein ligase) [NCBI Gene 4734] {aka NEDD4-1, RPF1}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, RETREG1 (reticulophagy regulator 1) [NCBI Gene 54463] {aka FAM134B, JK-1, JK1}, CTD (Coats disease) [NCBI Gene 1283], MIB2 (MIB E3 ubiquitin protein ligase 2) [NCBI Gene 142678] {aka ZZANK1, ZZZ5}, CAMK2G (calcium/calmodulin dependent protein kinase II gamma) [NCBI Gene 818] {aka CAMK, CAMK-II, CAMKG, MRD59}, CANX (calnexin) [NCBI Gene 821] {aka CNX, IP90, P90}, MAP1LC3B (microtubule associated protein 1 light chain 3 beta) [NCBI Gene 81631] {aka ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, CCPG1 (cell cycle progression 1) [NCBI Gene 9236] {aka CPR8}, GABARAPL1 (GABA type A receptor associated protein like 1) [NCBI Gene 23710] {aka APG8-LIKE, APG8L, ATG8, ATG8B, ATG8L, GEC1}, MAP1LC3C (microtubule associated protein 1 light chain 3 gamma) [NCBI Gene 440738] {aka ATG8J, LC3C}, GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B) [NCBI Gene 2904] {aka DEE27, EIEE27, GluN2B, MRD6, NMDAR2B, NR2B}, CD300C (CD300c molecule) [NCBI Gene 10871] {aka CLM-6, CMRF-35, CMRF-35A, CMRF35, CMRF35-A1, CMRF35A}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, GDF10 (growth differentiation factor 10) [NCBI Gene 2662] {aka BIP, BMP-3b, BMP3B}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, GRIN1 (glutamate ionotropic receptor NMDA type subunit 1) [NCBI Gene 2902] {aka DEE101, GluN1, MRD8, NDHMSD, NDHMSR, NMD-R1}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, RTN3 (reticulon 3) [NCBI Gene 10313] {aka ASYIP, HAP, NSPL2, NSPLII, RTN3-A1}, ATL3 (atlastin GTPase 3) [NCBI Gene 25923] {aka AT3, ATL-3, HSN1F}, SEC62 (SEC62 preprotein translocation factor) [NCBI Gene 7095] {aka Dtrp1, HTP1, TLOC1, TP-1}, UBQLN4 (ubiquilin 4) [NCBI Gene 56893] {aka A1U, A1Up, C1orf6, CIP75, UBIN}, FBXO2 (F-box protein 2) [NCBI Gene 26232] {aka FBG1, FBX2, Fbs1, NFB42, OCP1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, GRIN2A (glutamate ionotropic receptor NMDA type subunit 2A) [NCBI Gene 2903] {aka EPND, FESD, GluN2A, LKS, NMDAR2A, NR2A}, ATG7 (autophagy related 7) [NCBI Gene 10533] {aka APG7-LIKE, APG7L, GSA7, SCAR31}, TEX264 (testis expressed 264, ER-phagy receptor) [NCBI Gene 51368] {aka ZSIG11}
- **Diseases:** GRIN disorder (MESH:D009358), neurological disorders (MESH:D009461), hypotonia (MESH:D009123), depression (MESH:D003866), intellectual disability (MESH:D008607), NMDARs (MESH:D060426), DEE27 (OMIM:616139), behavioral abnormalities (MESH:D001523), neurodevelopmental delay (MESH:D006968), epilepsies (MESH:D004827), neurological diseases (MESH:D020271), developmental delay (MESH:D002658), autism spectrum disorder (MESH:D000067877), movement disorders (MESH:D009069), LBD (MESH:D006938)
- **Chemicals:** Laemmli buffer (MESH:C088816), disulfide (MESH:D004220), MK-801 (MESH:D016291), urea (MESH:D014508), streptomycin (MESH:D013307), EDTA (MESH:D004492), Alexa 568 (MESH:C000607448), DMSO (MESH:D004121), CaCl2 (MESH:D002122), Triton X-100 (MESH:D017830), paraformaldehyde (MESH:C003043), penicillin (MESH:D010406), NaCl (MESH:D012965), CHX (MESH:D003513), 3-MA (MESH:C025946), CM (MESH:D003476), saponin (MESH:D012503), oil (MESH:D009821), J (MESH:C000608249), DTT (MESH:D004229), CO2 (MESH:D002245), Rapamycin (MESH:D020123), Baf-A1 (MESH:C040929), agarose (MESH:D012685), DAPI (MESH:C007293), N-ethylmaleimide (MESH:D005033), HCl (MESH:D006851), SDS (MESH:D012967), MG132 (MESH:C072553), glutamate (MESH:D018698), Alexa Fluor 488 (MESH:C000711379), calcium (MESH:D002118), glycine (MESH:D005998), TBS (MESH:D013725), acrylamide (MESH:D020106), MgCl2 (MESH:D015636), Alexa 488 (-), glutamine (MESH:D005973)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Pan troglodytes (chimpanzee, species) [taxon 9598], Canis lupus familiaris (dog, subspecies) [taxon 9615]
- **Mutations:** R519Q
- **Cell lines:** HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12882719/full.md

## References

79 references — full list in the complete paper: https://tomesphere.com/paper/PMC12882719/full.md

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Source: https://tomesphere.com/paper/PMC12882719