# CDK2 inhibition promotes neuronal differentiation in neuroblastoma

**Authors:** Mohammad Alzrigat, Loay Mahmoud, Ada Nursel Topçu, Marta Valenti, Lu Zhang, Puck Veen, Fabian John, Wesam Bazzar, Kaisa Lehti, Lars-Gunnar Larsson

PMC · DOI: 10.1038/s41598-026-38123-4 · Scientific Reports · 2026-02-06

## TL;DR

This study shows that inhibiting CDK2 promotes neuronal differentiation in neuroblastoma, especially in MYCN-amplified tumors, suggesting a new therapeutic strategy.

## Contribution

The study identifies CDK2 as a MYCN target gene and shows that its inhibition enhances differentiation therapy in neuroblastoma.

## Key findings

- High CDK2 expression correlates with advanced, high-risk neuroblastoma and poor prognosis.
- CDK2 inhibition induces neuronal differentiation, particularly in MYCN-amplified tumors.
- Combining CDK2 inhibition with MYCN inhibition or retinoids enhances differentiation in vitro.

## Abstract

Neuroblastoma (NB) is a childhood tumor arising from neural crest-derived progenitor cells. Cyclin dependent kinase 2 (CDK2) has been suggested to be a promising therapeutic target in NB especially MYCN-amplified tumors. How CDK2 contributes to the development of NB is not fully understood. Here, we demonstrate that high CDK2 expression in NB correlates with advanced and high-risk disease, MYCN-amplification, poor prognosis, and undifferentiated tumors. We uncovered that CDK2 genetic or pharmacological inhibition induces neuronal differentiation in human NB cell lines, which effect is in general more prominent in the MYCN-amplified subtype. Further, we establish CDK2 as a MYCN target gene that modulate the MYC-pathway in MYCN-amplified NB. Notably, pharmacological inhibition of CDK2 in combination with MYCN inhibition or all-trans-retinoic acid (ATRA) differentiation therapy enhances neuronal differentiation in vitro. These results reveal an important function of CDK2 in NB and highlight CDK2 inhibition alone or in combination with MYC inhibitors and retinoids as a potential strategy for differentiation therapy in NB.

The online version contains supplementary material available at 10.1038/s41598-026-38123-4.

## Linked entities

- **Genes:** CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017], MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613]
- **Chemicals:** all-trans-retinoic acid (PubChem CID 444795)
- **Diseases:** neuroblastoma (MONDO:0005072)

## Full-text entities

- **Genes:** MYCL (MYCL proto-oncogene, bHLH transcription factor) [NCBI Gene 4610] {aka L-Myc, LMYC, MYCL1, bHLHe38}, GAP43 (growth associated protein 43) [NCBI Gene 2596] {aka B-50, GAP-43, PP46}, CDK4 (cyclin dependent kinase 4) [NCBI Gene 1019] {aka CMM3, MCPH31, PSK-J3}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, COL11A2 (collagen type XI alpha 2 chain) [NCBI Gene 1302] {aka DFNA13, DFNB53, FBCG2, HKE5, OSMEDA, OSMEDB}, NTRK1 (neurotrophic receptor tyrosine kinase 1) [NCBI Gene 4914] {aka MTC, TRK, TRK1, TRKA, Trk-A, p140-TrkA}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, Scg2 (secretogranin II) [NCBI Gene 20254] {aka Chgc, SgII}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932], SHH (sonic hedgehog signaling molecule) [NCBI Gene 6469] {aka HHG1, HLP3, HPE3, MCOPCB5, SMMCI, ShhNC}, ADA2 (adenosine deaminase 2) [NCBI Gene 51816] {aka ADGF, CECR1, IDGFL, PAN, SNEDS, VAIHS}, INHBA (inhibin subunit beta A) [NCBI Gene 3624] {aka EDF, FRP}, DNER (delta/notch like EGF repeat containing) [NCBI Gene 92737] {aka UNQ26, bet}, MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613] {aka FGLDS1, MODED, MPAPA, MYCNsORF, MYCNsPEP, N-myc}, SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358] {aka DEL22q13.3, PROSAP2, PSAP2, SCZD15, SPANK-2}, CDK15 (cyclin dependent kinase 15) [NCBI Gene 65061] {aka ALS2CR7, PFTAIRE2, PFTK2}, SCG2 (secretogranin II) [NCBI Gene 7857] {aka CHGC, EM66, SN, SgII}, Tubb3 (tubulin, beta 3 class III) [NCBI Gene 22152] {aka 3200002H15Rik, M(beta)3, M(beta)6}, FBXW7 (F-box and WD repeat domain containing 7) [NCBI Gene 55294] {aka AGO, CDC4, DEDHIL, FBW6, FBW7, FBX30}, MEGF8 (multiple EGF like domains 8) [NCBI Gene 1954] {aka C19orf49, CRPT2, EGFL4, SBP1}, STMN2 (stathmin 2) [NCBI Gene 11075] {aka SCG10, SCGN10}, SLIT2 (slit guidance ligand 2) [NCBI Gene 9353] {aka SLIL3, Slit-2}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}
- **Diseases:** LGL (MESH:D054066), death (MESH:D003643), undifferentiated (MESH:C580334), tumorigenesis (MESH:D063646), undifferentiated tumors (MESH:D002277), inflammatory (MESH:D007249), medulloblastoma (MESH:D008527), NB (MESH:D009447), Cancer (MESH:D009369), neuroendocrine tumor (MESH:D018358)
- **Chemicals:** streptomycin (MESH:D013307), Milciclib (MESH:C550092), Hoechst 33342 (MESH:C017807), DMSO (MESH:D004121), Abemaciclib (MESH:C000590451), Triton X-100 (MESH:D017830), paraformaldehyde (MESH:C003043), penicillin (MESH:D010406), Doxycycline hyclate (MESH:D004318), PBS (MESH:D007854), lipofectamine 2000 (MESH:C086724), CO2 (MESH:D002245), H2O (MESH:D014867), ATRA (MESH:D014212), CYC065 (MESH:C000621593), Dinaciclib (MESH:C553669), Alexa Fluor 488 (MESH:C000711379), Resazurin (MESH:C005843), leucine (MESH:D007930), RA (MESH:D011883), retinoid (MESH:D012176), palbociclib (MESH:C500026), 5425 S (-), resorufin (MESH:C014180), Puromycin (MESH:D011691), dox (MESH:D004317), Alexa Fluor 647 (MESH:C569686)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Mycoplasma (genus) [taxon 2093]
- **Cell lines:** 6H — Mus musculus (Mouse), Hybridoma (CVCL_C4Z2), TET21N — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_9812), NGP — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_2141), KELLY — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_2092), SH-SY5Y — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0019), SK-N-BE(2)C — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0529), SK-N-F1 — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_1702), SK-N-BE(2) — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0528), IMR32 — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0346), SK-N-DZ — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_1701)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12881557/full.md

## References

10 references — full list in the complete paper: https://tomesphere.com/paper/PMC12881557/full.md

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Source: https://tomesphere.com/paper/PMC12881557