# Comparative analysis of sex-based, vendor-based, and species differences in cytochrome P450 metabolism

**Authors:** Nivedita Kinatukara, Xin Xu, Pranav Shah

PMC · DOI: 10.1038/s41598-025-34936-x · Scientific Reports · 2026-01-13

## TL;DR

This study compares how sex, species, and vendor differences affect drug metabolism by CYP450 enzymes, highlighting their impact on drug development accuracy.

## Contribution

The study systematically compares sex, species, and vendor variability in CYP450 metabolism for the first time.

## Key findings

- Sex-specific differences in drug clearance were observed, consistent with clinical data.
- Interspecies differences were identified, such as male-predominant rodent CYP450 isoforms lacking human equivalents.
- Vendor discrepancies were found, with the same species-sex microsome pools showing different metabolic stability.

## Abstract

Hepatic clearance is crucial as it directly impacts drug exposure, efficacy, and safety. Cytochrome P450 (CYP450) enzymes play a pivotal role in drug metabolism and exhibit differences based on sex, species, and commercial liver microsome vendors. These variables can directly influence translational accuracy when preclinical data are applied to human drug development. In this study, we evaluated metabolic stability of isozyme-selective compounds across human, rat, and mouse liver microsomes, incorporating both male and female microsomes and multiple vendors. Our analysis revealed three layers of variability: (1) sex-specific differences consistent with prior clinical observations, where certain substrates displayed markedly faster clearance in one sex; (2) interspecies divergence, such as male-predominant isoforms in rodents without direct human orthologs; and (3) vendor-related discrepancies, where the same species-sex pool yielded divergent stability outcomes depending on microsome source. Together, these findings illustrate the combined effects of sex, species, and vendor source that contribute to variability in CYP450-mediated metabolism. By systematically comparing these factors, our work underscores the importance of considering these variables during early preclinical studies. Accounting for these sources of variability may improve the translational reliability of in vitro assays, reduce costly late-stage failures, and better support the development of safe and effective therapeutics.

## Linked entities

- **Proteins:** CYP71B9 (cytochrome P450, family 71, subfamily B, polypeptide 9), LOC107927610 (alkane hydroxylase MAH1-like)
- **Species:** Homo sapiens (taxon 9606), Rattus norvegicus (taxon 10116), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** CYP3A4 (cytochrome P450 family 3 subfamily A member 4) [NCBI Gene 1576] {aka CP33, CP34, CYP3A, CYP3A3, CYPIIIA3, CYPIIIA4}, CYP2C8 (cytochrome P450 family 2 subfamily C member 8) [NCBI Gene 1558] {aka CPC8, CYP2C8DM, CYPIIC8, MP-12/MP-20}, Cyp2d1 (cytochrome P450, family 2, subfamily d, polypeptide 1) [NCBI Gene 266684] {aka Cyp2d9}, NR1I3 (nuclear receptor subfamily 1 group I member 3) [NCBI Gene 9970] {aka CAR, CAR1, MB67}, Cyp2b12 (cytochrome P450, family 2, subfamily b, polypeptide 12) [NCBI Gene 29295] {aka Cyp2b15}, Cyp2c11 (cytochrome P450, subfamily 2, polypeptide 11) [NCBI Gene 29277] {aka CYP2CII, Cyp2c, Cyp2c11l}, GGH (gamma-glutamyl hydrolase) [NCBI Gene 8836] {aka GATD10, GH}, PPIG (peptidylprolyl isomerase G) [NCBI Gene 9360] {aka CARS-Cyp, CYP, SCAF10, SRCyp}, Cyp2d4 (cytochrome P450, family 2, subfamily d, polypeptide 4) [NCBI Gene 171522] {aka Cyp2d18, Cyp2d22, Cyp2d4v1, Cyp2d4v2, Cyp2d6}, Cyp2c7 (cytochrome P450, family 2, subfamily c, polypeptide 7) [NCBI Gene 29298] {aka Cyp2c39}, Cyp2b3 (cytochrome P450, family 2, subfamily b, polypeptide 3) [NCBI Gene 286953] {aka CYPIIB3, Cyp2b6}, Cyp2c12 (cytochrome P450, family 2, subfamily c, polypeptide 12) [NCBI Gene 25011] {aka Cyp2c40, P450pb1, RATP4515B2, RATP4515B8}, Cyp1a2 (cytochrome P450, family 1, subfamily a, polypeptide 2) [NCBI Gene 24297] {aka CYPD45, P-450d, RATCYPD45}, CYP2D6 (cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)) [NCBI Gene 1565] {aka CPD6, CYP2D, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2}, Cyp3a23-3a1 (cytochrome P450, family 3, subfamily a, polypeptide 23-polypeptide 1) [NCBI Gene 25642] {aka AABR07035343.1, CYP, CYP3A23, Cyp3a1, Cyp3a23/3a1, Cyp3a3}, CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557] {aka CPCJ, CYP2C, CYPIIC17, CYPIIC19, P450C2C, P450IIC19}, Cyp3a2 (cytochrome P450, family 3, subfamily a, polypeptide 2) [NCBI Gene 266682] {aka Cyp3a11}, GH1 (growth hormone 1) [NCBI Gene 2688] {aka GH, GH-N, GHB5, GHN, IGHD1A, IGHD1B}, CYP1A2 (cytochrome P450 family 1 subfamily A member 2) [NCBI Gene 1544] {aka CP12, CYPIA2, P3-450, P450(PA)}, Ggh (gamma-glutamyl hydrolase) [NCBI Gene 25455], Cyp2c13 (cytochrome P450, family 2, subfamily c, polypeptide 13) [NCBI Gene 171521] {aka Cyp2c38}, NR1I2 (nuclear receptor subfamily 1 group I member 2) [NCBI Gene 8856] {aka BXR, ONR1, PAR, PAR1, PAR2, PARq}
- **Diseases:** dementia (MESH:D003704), bleeding (MESH:D006470), toxicity (MESH:D064420), hypoglycemia (MESH:D007003), analgesia (MESH:D000699), impaired driving (MESH:D060825)
- **Chemicals:** N (MESH:D009584), verapamil (MESH:D014700), sulfonylureas (MESH:D013453), amodiaquine (MESH:D000655), flibanserin (MESH:C098107), tucatinib (MESH:C000705452), dextromethorphan (MESH:D003915), tetrabenazine (MESH:D013747), bupropion (MESH:D016642), tryptophan (MESH:D014364), omeprazole (MESH:D009853), zolpidem (MESH:D000077334), phenacetin (MESH:D010615), tizanidine (MESH:C023754), duloxetine (MESH:D000068736), acetonitrile (MESH:C032159), E2027 (-), venlafaxine (MESH:D000069470), ondansetron (MESH:D017294), bosentan (MESH:D000077300), rosiglitazone (MESH:D000077154), chlorpheniramine (MESH:D002744), propranolol (MESH:D011433), barbiturate (MESH:C032232), albendazole (MESH:D015766), midazolam (MESH:D008874), efavirenz (MESH:C098320), nortriptyline (MESH:D009661), selexipag (MESH:C523468), buspirone (MESH:D002065), artemisinin (MESH:C031327), paclitaxel (MESH:D017239), pioglitazone (MESH:D000077205), tacrine (MESH:D013619), S-mephenytoin (MESH:D008617), Glimepiride (MESH:C057619), DMSO (MESH:D004121), caffeine (MESH:D002110), glibenclamide (MESH:D005905), codeine (MESH:D003061), theophylline (MESH:D013806), repaglinide (MESH:C072379), phosphate (MESH:D010710), simvastatin (MESH:D019821), desipramine (MESH:D003891), dasabuvir (MESH:C588260), carvedilol (MESH:D000077261), citalopram (MESH:D015283), diazepam (MESH:D003975), clopidogrel (MESH:D000077144), cyclosporine (MESH:D016572), olanzapine (MESH:D000077152), clozapine (MESH:D003024), naloxegol (MESH:C000589308), ifosfamide (MESH:D007069), acetaminophen (MESH:D000082), histidine (MESH:D006639), water (MESH:D014867), piroxicam (MESH:D010894), NADPH (MESH:D009249)
- **Species:** Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Escherichia coli (E. coli, species) [taxon 562], Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Rodentia (rodent, order) [taxon 9989]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12881442/full.md

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12881442/full.md

## References

9 references — full list in the complete paper: https://tomesphere.com/paper/PMC12881442/full.md

---
Source: https://tomesphere.com/paper/PMC12881442