# APOBEC3B enhances the efficacy of PARP inhibitors in elimination of ovarian cancer stem cell

**Authors:** Maria Rivera, Lucy Liu, Sabina Enlund, Chae-Eun Lim, Haoran Zhang, Kaifu Yang, Roman Sasik, Leslie A. Crews, Kathleen M. Fisch, Ramez N. Eskander, Frida Holm, Qingfei Jiang

PMC · DOI: 10.1038/s41598-026-35939-y · Scientific Reports · 2026-01-14

## TL;DR

This study shows that APOBEC3B helps PARP inhibitors work better against ovarian cancer stem cells, potentially improving treatment outcomes.

## Contribution

The study reveals that APOBEC3B expression influences PARP inhibitor efficacy by regulating cancer stem cell behavior and replication stress.

## Key findings

- Cancer stem cell tumorspheres have lower APOBEC3B expression compared to non-stem cancer cells.
- High APOBEC3B expression increases replication stress and synergizes with PARP inhibitors.
- Inhibiting APOBEC3B leads to PARP inhibitor resistance and increased stemness.

## Abstract

Late detection and tumor recurrence are major factors driving the lethality of high-grade serous ovarian carcinoma (HGSOC). PARP inhibitors (PARPi) have achieved significant clinical efficacy by selectively targeting DNA repair deficiencies in HGSOC patients with BRCA mutations and homologous recombination deficiency (HRD). However, a subset of patients ultimately develops resistance to PARPi, necessitating alternative effective treatment options. The mutational signatures of APOBEC3 family of DNA deaminases are widespread across a broad array of cancer types. Here, we report that cancer stem cell (CSC)-like tumorspheres exhibit reduced A3B expression compared to non-CSC adherent counterparts. Importantly, inhibition of A3B leads to PARPi resistance, elevated frequency of CSCs, and enhanced expression of stemness factors. In addition, we found that high A3B-expressing cells are under strong replication stress and thus synergize efficiently with PARPi. These studies reveal the important role A3B plays in regulating PARPi response.

The online version contains supplementary material available at 10.1038/s41598-026-35939-y.

## Linked entities

- **Genes:** APOBEC3B (apolipoprotein B mRNA editing enzyme catalytic subunit 3B) [NCBI Gene 9582], Brca2 (BRCA2, DNA repair associated) [NCBI Gene 37916]
- **Diseases:** ovarian cancer (MONDO:0005140)

## Full-text entities

- **Genes:** APOBEC3D (apolipoprotein B mRNA editing enzyme catalytic subunit 3D) [NCBI Gene 140564] {aka A3D, A3DE, APOBEC3DE, APOBEC3E, ARP6}, HPRT1 (hypoxanthine phosphoribosyltransferase 1) [NCBI Gene 3251] {aka HGPRT, HPRT}, Apobec3 (apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3) [NCBI Gene 80287] {aka Apobec, Arp3, Cem15, Gm20117, Rfv3}, PROM1 (prominin 1) [NCBI Gene 8842] {aka AC133, CD133, CORD12, MCDR2, MSTP061, PROML1}, APOBEC3B (apolipoprotein B mRNA editing enzyme catalytic subunit 3B) [NCBI Gene 9582] {aka A3B, APOBEC1L, ARCD3, ARP4, DJ742C19.2, PHRBNL}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, APOBEC3A (apolipoprotein B mRNA editing enzyme catalytic subunit 3A) [NCBI Gene 200315] {aka A3A, ARP3, PHRBN, bK150C2.1}, CHEK2 (checkpoint kinase 2) [NCBI Gene 11200] {aka CDS1, CHK2, HuCds1, LFS2, PP1425, RAD53}, TBCE (tubulin folding cofactor E) [NCBI Gene 6905] {aka HRD, KCS, KCS1, PEAMO, pac2}, APOBEC3C (apolipoprotein B mRNA editing enzyme catalytic subunit 3C) [NCBI Gene 27350] {aka A3C, APOBEC1L, ARDC2, ARDC4, ARP5, PBI}, BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675] {aka BRCC2, BROVCA2, FACD, FAD, FAD1, FANCD}, EPCAM (epithelial cell adhesion molecule) [NCBI Gene 4072] {aka Ber-Ep4, BerEp4, DIAR5, EGP-2, EGP314, EGP40}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, APOBEC3G (apolipoprotein B mRNA editing enzyme catalytic subunit 3G) [NCBI Gene 60489] {aka A3G, ARCD, ARP-9, ARP9, CEM-15, CEM15}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657] {aka ANOP3, MCOPS3}, Lama3 (laminin, alpha 3) [NCBI Gene 16774] {aka Lama3B, [a]3B}, APOBEC3F (apolipoprotein B mRNA editing enzyme catalytic subunit 3F) [NCBI Gene 200316] {aka A3F, ARP8, BK150C2.4.MRNA, KA6}, Il2rg (interleukin 2 receptor, gamma chain) [NCBI Gene 16186] {aka CD132, [g]c, gamma(c), gc, p64}, NANOG (Nanog homeobox) [NCBI Gene 79923], APOBEC3H (apolipoprotein B mRNA editing enzyme catalytic subunit 3H) [NCBI Gene 164668] {aka A3H, ARP-10, ARP10}, POU5F1 (POU class 5 homeobox 1) [NCBI Gene 5460] {aka OCT3, OCT4, OCT4Borf1, OTF-3, OTF3, OTF4}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, Rag2 (recombination activating gene 2) [NCBI Gene 19374] {aka Rag-2}, UNG (uracil DNA glycosylase) [NCBI Gene 7374] {aka DGU, HIGM4, HIGM5, UDG, UNG1, UNG15}, CD34 (CD34 molecule) [NCBI Gene 947], CD24 (CD24 molecule) [NCBI Gene 100133941] {aka CD24A}, CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}
- **Diseases:** cytotoxicity (MESH:D064420), systemic lupus erythematosus (MESH:D008180), homologous recombination deficiency (MESH:C535296), HGSOC (MESH:D010051), Tumor (MESH:D009369), PDX (MESH:C536408), gynecological malignancy (MESH:D005833), inflammation (MESH:D007249), breast cancer (MESH:D001943), breast and ovarian cancer (MESH:D061325), mycoplasma (MESH:D009175), dislocation (MESH:D004204), COVID-19 (MESH:D000086382), tumor metastasis (MESH:D009362), ataxia telangiectasia (MESH:D001260)
- **Chemicals:** EMA (MESH:C014535), Alexa 647 (MESH:C569686), VE-821 (MESH:C560580), L-glutamine (MESH:D005973), Cat #NC0968989 (-), acrylamide (MESH:D020106), DEAB (MESH:C007368), platinum (MESH:D010984), methanol (MESH:D000432), Uracil (MESH:D014498), 7-AAD (MESH:C025942), AP (MESH:D000667), SDS (MESH:D012967), Olaparib (MESH:C531550), MTT (MESH:C070243), CO2 (MESH:D002245), PBS (MESH:D007854), penicillin (MESH:D010406), Tween (MESH:D011136), Triton X100 (MESH:D017830), DMSO (MESH:D004121), ethanol (MESH:D000431), streptomycin (MESH:D013307)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** C-to-T, A3A, T2A, C-to-G
- **Cell lines:** CVCL_0134 — Homo sapiens (Human), Finite cell line (CVCL_L958), A2780 — Homo sapiens (Human), Ovarian endometrioid adenocarcinoma, Cancer cell line (CVCL_0134), shA3B-2 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_SC96), shA3B — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_C6YJ), shControl — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_UD94), Cat #HTB-77 — Mus musculus (Mouse), Hybridoma (CVCL_A8FQ), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), SKOV3 — Homo sapiens (Human), Ovarian serous cystadenocarcinoma, Cancer cell line (CVCL_0532), shA3B-1 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_SC95), 7AAD — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_H340), Cat # 93,112,519 — Homo sapiens (Human), Maroteaux-Lamy syndrome, Finite cell line (CVCL_V775), PDX — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_UD76), TOV-21G — Homo sapiens (Human), Ovarian clear cell adenocarcinoma, Cancer cell line (CVCL_3613), OV033 — Homo sapiens (Human), Cutaneous melanoma, Cancer cell line (CVCL_8785), CVCL_0532 — Homo sapiens (Human), Fragile X syndrome, Transformed cell line (CVCL_9A63), COV362 — Homo sapiens (Human), High grade ovarian serous adenocarcinoma, Cancer cell line (CVCL_2420)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC12881425