# The Biosynthetic Gene Cluster of Boydines in Scedosporium apiospermum

**Authors:** Clarisse Carvalho, Anaïs Hérivaux, Méline Wéry, Jean-Charles Jouhanneau, Nicolas Papon, Jean-Philippe Bouchara

PMC · DOI: 10.1007/s11046-026-01050-z · Mycopathologia · 2026-02-07

## TL;DR

This paper identifies a gene cluster in Scedosporium apiospermum that produces compounds possibly helping the fungus survive oxidative stress.

## Contribution

The study identifies the biosynthetic gene cluster responsible for producing boydines and their role in oxidative stress resistance.

## Key findings

- A biosynthetic gene cluster comprising 15 genes, including a polyketide synthase, was identified.
- The cluster is conserved across Scedosporium genomes and related fungi.
- The gene cluster likely produces aranotin-related hybrid compounds called boydins.

## Abstract

Although Scedosporium species may cause severe infections in immunocompromised patients, little is known about their pathogenic mechanisms. The thioredoxin reductases (TrxRs) of Scedosporium apiospermum are thought to play an important role in protecting the fungus against oxidative stress. The genes that encode these proteins are part of biosynthetic gene clusters (BGCs) which ensure the synthesis of non-ribosomal peptides. Due to the discrepancies between chemical studies and bioinformatic predictions regarding the product of the BGC comprising the TrxR-encoding gene SAPIO_CDS1830, a large-scale study of almost 300 fungal genomes was undertaken to search for BGCs that could potentially synthesize homodipeptides. Phylogenetic analysis of the amino acid sequence of the adenylation domain of a large number of non-ribosomal peptide synthases confirmed the assembly of two phenylalanine molecules. Synteny analysis clearly showed that this BGC ensures the synthesis of some aranotin-related hybrid compounds, called boydins. This BGC comprised 15 genes, including one encoding a polyketide synthase, which allows the synthesis of the polyketide chain attached to the dipeptide skeleton. The orthologues of all members of this BGC were also identified in all available Scedosporium genomes, as well as in other Sordariomycetes and even in some phylogenetically distant molds living as endophytes or plants pathogens, or on decaying wood. These secondary metabolites, which may therefore not be specific to the Scedosporium genus, could play a role in evasion of the fungus to the oxidative stress, as suggested by the overexpression of several members of this BGC in response to oxidative stress.

The online version contains supplementary material available at 10.1007/s11046-026-01050-z.

## Linked entities

- **Genes:** SAPIO_CDS1830 (Thioredoxin reductase) [NCBI Gene 27720902]
- **Species:** Scedosporium apiospermum (taxon 563466), Sordariomycetes (taxon 147550)

## Full-text entities

- **Genes:** SAPIO_CDS2806 [NCBI Gene 27721878], actin [NCBI Gene 27724910], SAPIO_CDS1828 [NCBI Gene 27720900], polyketide synthase [NCBI Gene 27728120], Major Facilitator Superfamily [NCBI Gene 27720120], SAPIO_CDS1827 [NCBI Gene 27720899], SAPIO_CDS1819 [NCBI Gene 27720891], SAPIO_CDS1821 [NCBI Gene 27720893], SAPIO_CDS1820 [NCBI Gene 27720892], SAPIO_CDS1833 [NCBI Gene 27720905], Glutathione S-transferase [NCBI Gene 27720760], SAPIO_CDS1825 [NCBI Gene 27720897], SAPIO_CDS1829 [NCBI Gene 27720901], Acyl transferase [NCBI Gene 27728818], SAPIO_CDS1830 (Thioredoxin reductase) [NCBI Gene 27720902], SAPIO_CDS1835 [NCBI Gene 27720907], SAPIO_CDS1831 [NCBI Gene 27720903], SAPIO_CDS2796 [NCBI Gene 27721868], SAPIO_CDS1826 [NCBI Gene 27720898], acetyl transferase [NCBI Gene 27724189], SAPIO_CDS10214 [NCBI Gene 27719388], SAPIO_CDS1822 [NCBI Gene 27720894], membrane dipeptidase [NCBI Gene 27728741], SAPIO_CDS1823 [NCBI Gene 27720895], SAPIO_CDS1824 [NCBI Gene 27720896], SAPIO_CDS1832 [NCBI Gene 27720904]
- **Diseases:** fungal (MESH:D009181), AIDS (MESH:D000163), bone and joint infections (MESH:D001847), CF (MESH:D003550), Type 1 PKSs (MESH:D003922), hematological malignancies (MESH:D019337), pulmonary infections (MESH:D012141), diabetes (MESH:D003920), Aspergillus infections (MESH:D001228), microsporidiosis (MESH:D016881), sinusitis (MESH:D012852), boydines A to D (MESH:D014808), bronchitis (MESH:D001991), febrile pneumopathies (MESH:C535590), chronic granulomatous disease (MESH:D006105), leaf spot disease (MESH:D008796), Scedosporium (MESH:C000656924), bronchopulmonary mycoses (MESH:D055744), infection (MESH:D007239), mycetomas (MESH:D008271), colonization (MESH:D003108)
- **Chemicals:** cumene hydroperoxide (MESH:C007164), SYBR  Green (MESH:C098022), alanine (MESH:D000409), aflatoxin (MESH:D000348), NaCl (MESH:D012965), NADP(H) + (MESH:D009249), agar (MESH:D000362), acetyl-CoA (MESH:D000105), O-methyl sterigmatocystin (MESH:C039904), phenol (MESH:D019800), terpene (MESH:D013729), W493 B (MESH:C500255), acid (MESH:D000143), alternapyrone (MESH:C508257), ergosterol (MESH:D004875), oxygen (MESH:D010100), cyclodepsipeptides (MESH:D047630), oxygen radicals (MESH:D017382), arginine (MESH:D001120), disulfide (MESH:D004220), fumonisin (MESH:D037341), zearalenone (MESH:D015025), acetylaranotin (MESH:C006370), Triton X100 (MESH:D017830), gliotoxin (MESH:D005912), chloroform (MESH:D002725), carbon (MESH:D002244), EDTA (MESH:D004492), SM (MESH:D012493), ethanol (MESH:D000431), ETPs (MESH:C583099), Aspirochlorine (MESH:C119402), aranotin (MESH:C002500), sporidesmin (MESH:C001873), sulfur (MESH:D013455), iron (MESH:D007501), Fumagillin (MESH:C026211), sesquiterpene (MESH:D012717), lignin (MESH:D008031), W (MESH:D014414), metal (MESH:D008670), BII-rafflesfungin (MESH:C539861), malonyl-CoA (MESH:D008316), Nalpha-methylcoprogen B (-), isopropanol (MESH:D019840), phosphopantetheine (MESH:C003129), mellein (MESH:C120538), thiol (MESH:D013438), tryptophan (MESH:D014364), lipopeptide (MESH:D055666), asperfuranone (MESH:C552682), echinocandins (MESH:D054714), squalestatin (MESH:C075117), DKP (MESH:D054659), notoamides (MESH:C000596573), A- (MESH:D001151), AA (MESH:D000596), agarose (MESH:D012685), superoxide (MESH:D013481), glutathione (MESH:D005978)
- **Species:** Septoria linicola (species) [taxon 215465], Ceratocystis (genus) [taxon 5157], Shigella boydii (species) [taxon 621], Pseudocercospora fuligena (species) [taxon 685502], Homo sapiens (human, species) [taxon 9606], Pseudomonas aeruginosa (species) [taxon 287], Pyricularia oryzae (rice blast fungus, species) [taxon 318829], Sordariomycetes (class) [taxon 147550], Dothistroma septosporum (species) [taxon 64363], Colletotrichum musicola (species) [taxon 2175873], Mus musculus (house mouse, species) [taxon 10090], Zymoseptoria brevis (species) [taxon 1047168], Zasmidium cellare (species) [taxon 395010], Cercospora kikuchii (species) [taxon 84275], Manihot esculenta (cassava, species) [taxon 3983], Aspergillus nidulans (species) [taxon 162425], Scedosporium apiospermum (species) [taxon 563466], Nicotiana tabacum (American tobacco, species) [taxon 4097], Magnaporthales (order) [taxon 639021], Aspergillus oryzae (species) [taxon 5062], Pseudocercospora fijiensis (species) [taxon 1873960], Immersiella caudata [taxon 260663], Colletotrichum cliviicola (species) [taxon 2175846], Hypericum maculatum (species) [taxon 269006], Zymoseptoria pseudotritici (species) [taxon 1173715], Mycosphaerellaceae (family) [taxon 93133], Fulvia fulva (species) [taxon 5499], Hypocreales (order) [taxon 5125], Colletotrichum caudatum (species) [taxon 5460], Aspergillus terreus (species) [taxon 33178], Phialophoropsis (genus) [taxon 1739117], Lomentospora prolificans (species) [taxon 41688], Zymoseptoria tritici (species) [taxon 1047171], Schnella guianensis (species) [taxon 508984], Cercospora beticola (species) [taxon 122368], Thyridium curvatum (species) [taxon 1093900], Immersiella caudata (species) [taxon 314043], Glarea lozoyensis (species) [taxon 101852], Sphaerulina musiva (species) [taxon 85929], Apis mellifera (bee, species) [taxon 7460], Sordariales (order) [taxon 5139], Scedosporium dehoogii (species) [taxon 563467], Bretziella fagacearum (species) [taxon 1836592], Scedosporium (genus) [taxon 41687], Scedosporium minutisporum (species) [taxon 315945], Vigna unguiculata (cowpea, species) [taxon 3917], Sarocladium implicatum (species) [taxon 1610689], Ramularia collo-cygni (species) [taxon 112498], Ambrosiella [taxon 150494], Cercospora zeae-maydis (species) [taxon 135779], Aspergillus fumigatus (species) [taxon 746128], Lecanosticta acicola (brown spot needle blight, species) [taxon 111012], Chalaropsis (genus) [taxon 129323]
- **Mutations:** tryptophan for 29, C with 0, tryptophan for 7, Phe-Phe, tryptophan for 16, W 493 A, C1-A
- **Cell lines:** IHEM 23826 — Homo sapiens (Human), Ornithine carbamoyltransferase deficiency disease, Transformed cell line (CVCL_Y757), MUT 6113 — Homo sapiens (Human), Finite cell line (CVCL_F134), MUT6114 — Homo sapiens (Human), Finite cell line (CVCL_7449)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC12881047