# Status and advancement of root-knot nematode management strategies and the emerging CRISPR/Cas biotechnology application

**Authors:** Xiaoping Pan, Ugur Yildiz, Sarah K. Armstrong, Kaitlyn Bissonnette

PMC · DOI: 10.1007/s10142-025-01804-w · Functional & Integrative Genomics · 2026-02-07

## TL;DR

This paper reviews current strategies for managing root-knot nematodes and highlights the potential of CRISPR/Cas technology to develop nematode-resistant crops.

## Contribution

The paper introduces the application of CRISPR/Cas in targeting plant compatibility factors to enhance resistance against root-knot nematodes.

## Key findings

- CRISPR/Cas technology has shown simplicity and robustness in improving plant traits, including nematode resistance.
- Knocking out plant compatibility factors using CRISPR/Cas has achieved significant progress in nematode resistance development.
- An experimental pipeline for applying CRISPR/Cas to develop nematode resistance in cotton is described.

## Abstract

Root-knot nematodes (RKNs), Meloidogyne spp., exhibit a broad host range, threatening more than 3000 species of plants, including agriculturally important crops such as cotton (Gossypium hirsutum), tomato (Lycopersicon esculentum) and rice (Oryza sativa). Among the over 90 RKN species, the four most prevalent are M. incognita, M. arenaria, M. javanica, and M. hapla, with M. incognita being the most damaging. This paper reviewed the current RKN management strategies, including chemical nematicides, biological control, crop rotation, and resistant varieties, with a focus on the application of the revolutionary CRISPR/Cas genome editing tool in developing RKN resistance in plants. CRISPR/Cas has been widely utilized for improving crop traits due to its specificity, streamline, and inheritability. Recent progress has demonstrated the simplicity and robustness of CRISPR/Cas technology in improving plant traits. Among these, the development of nematode resistance by CRISPR/Cas knocking out of plant compatibility factors in model and commercial plants, has achieved significant progress. This review summarizes the RKN parasitism mechanisms and plant compatibility factors that would be promising CRISPR/Cas targets. The fundamentals and key aspects of CRISPR/Cas genome editing technology are addressed and discussed, and an example experimental pipeline for developing nematode resistance in cotton is described.

## Linked entities

- **Species:** Gossypium hirsutum (taxon 3635), Oryza sativa (taxon 4530), Meloidogyne incognita (taxon 6306), Meloidogyne arenaria (taxon 6304), Meloidogyne javanica (taxon 6303), Meloidogyne hapla (taxon 6305)

## Full-text entities

- **Diseases:** toxic (MESH:D064420), Crop rotation (MESH:D009759), neurotoxic (MESH:D020258), Nematodes (MESH:D009349), Meloidogyne infection (MESH:D007239), starvation (MESH:D013217), necrosis (MESH:D009336), gall (MESH:D005706), M. incognita infection (MESH:C566367), HIGS (MESH:D000014)
- **Chemicals:** Vapam (MESH:C008435), carbamate (MESH:D002219), pectin (MESH:D010368), Fluopyram (MESH:C572868), Dazomet (MESH:C012864), K-Pam (-), Oxamyl (MESH:C011960), 1,3-D (MESH:C023891), ET (MESH:C005073), nitrogen (MESH:D009584), glucosinolates (MESH:D005961), kanamycin (MESH:D007612), Aldicarb (MESH:D000448), JA (MESH:C011006), Methyl Bromide (MESH:C005218), water (MESH:D014867), cytokinin (MESH:D003583), Fosthiazate (MESH:C493102), Fluensulfone (MESH:C571996), agar (MESH:D000362), organophosphate (MESH:D010755), isothiocyanates (MESH:D017879), Chloropicrin (MESH:C100187), ozone (MESH:D010126), ROS (MESH:D017382), T (MESH:D014316), auxin (MESH:D007210), SA (MESH:D000077145)
- **Species:** Meloidogyne hapla (species) [taxon 6305], Gossypium barbadense (Egyptian cotton, species) [taxon 3634], Amaranthus (genus) [taxon 3564], Hordeum vulgare (barley, species) [taxon 4513], Capsicum annuum (sweet pepper, species) [taxon 4072], Solanum lycopersicum (tomato, species) [taxon 4081], Bacillus thuringiensis (species) [taxon 1428], Meloidogyne javanica (root-knot nematode, species) [taxon 6303], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Purpureocillium lilacinum (species) [taxon 33203], Bacillus sp. T (species) [taxon 1071724], Nematoda (nematode, phylum) [taxon 6231], Zea mays (maize, species) [taxon 4577], Streptococcus pyogenes (species) [taxon 1314], Raphanus sativus (radish, species) [taxon 3726], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Fungi (kingdom) [taxon 4751], Homo sapiens (human, species) [taxon 9606], Sorghum bicolor (broomcorn, species) [taxon 4558], Solanum melongena (aubergine, species) [taxon 4111], Portulaca oleracea (species) [taxon 46147], Gossypium hirsutum (American cotton, species) [taxon 3635], Meloidogyne incognita (southern root-knot nematode, species) [taxon 6306], Arachis hypogaea (goober, species) [taxon 3818], Triticum aestivum (bread wheat, species) [taxon 4565], M. graminicola [taxon 54734], Brassica juncea (brown mustard, species) [taxon 3707], Calendula officinalis (common marigold, species) [taxon 41496], Cytobacillus firmus (species) [taxon 1399], Avena sativa (cultivated oat, species) [taxon 4498], Cenchrus americanus (bulrush millet, species) [taxon 4543], Agrobacterium tumefaciens (species) [taxon 358], Escherichia coli (E. coli, species) [taxon 562]
- **Cell lines:** EHA105 — Mus musculus (Mouse), Hybridoma (CVCL_B0LM), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), pKSE401 — Homo sapiens (Human), Duchenne muscular dystrophy, Induced pluripotent stem cell (CVCL_VM58)

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## Figures

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## References

5 references — full list in the complete paper: https://tomesphere.com/paper/PMC12881027/full.md

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Source: https://tomesphere.com/paper/PMC12881027