# The CspC:CspA heterodimer transduces germinant and co-germinant signals during Clostridioides difficile spore germination

**Authors:** Morgan E. McNellis, Gonzalo González-Del Pino, Juan A. Serrano-Jiménez, Emily R. Forster, Anca Ioana Stoica, Ekaterina E. Heldwein, Aimee Shen

PMC · DOI: 10.1371/journal.pbio.3003610 · PLOS Biology · 2026-02-02

## TL;DR

This study reveals how Clostridioides difficile spores sense signals to germinate, showing that the CspC:CspA complex is crucial for detecting both germinant and co-germinant signals.

## Contribution

The study identifies the CspC:CspA heterodimer as the key signaling complex for spore germination in C. difficile.

## Key findings

- CspC and CspA form a stable heterodimer that transduces germinant and co-germinant signals.
- The crystal structure of the CspC:CspA complex reveals interactions critical for signal sensitivity.
- CspA influences the response to both germinant and co-germinant signals, not just co-germinants.

## Abstract

The clinically significant pathogen Clostridioides difficile lacks the transmembrane nutrient germinant receptors conserved in almost all spore-forming bacteria. Instead, C. difficile initiates spore germination using a unique mechanism that requires two signals: a bile acid germinant and a co-germinant, which can be either an amino acid or a divalent cation. While two soluble pseudoproteases, CspC and CspA, were initially identified as the germinant and co-germinant receptors, respectively, in C. difficile, we previously identified residues in an unstructured region of CspC that regulate the sensitivity of C. difficile spores to both signals. However, the mechanism by which CspC transduces these signals remained unclear. Here, we demonstrate that CspC forms a stable complex with CspA and determine the crystal structure of the CspC:CspA heterodimer. The structure reveals extensive interactions along the binding interface, including direct interactions between the unstructured region of CspC and CspA. Using structure-function analyses, we identify CspC:CspA interactions that regulate the sensitivity of C. difficile spores to germinant signals and show that CspA regulates the response of C. difficile to not only co-germinant but also germinant signals. While we show that CspA can form a homodimer and determine its crystal structure, CspA homodimerization appears unimportant for C. difficile spore germination. Collectively, our analyses establish the CspC:CspA heterodimer, rather than its individual constituents, as a critical signaling node for sensing both germinant and co-germinant signals. They also suggest a new mechanistic model for how C. difficile transduces germinant signals, which could guide the development of therapeutics against this important pathogen.

Unlike other bacteria, C. difficile must detect both a germinant signal and a co-germinant signal to trigger spore germination, but how these cues are sensed is unknown. This study finds that the CspC:CspA complex serves as a key signaling node that integrates environmental cues to regulate Clostridioides difficile spore germination.

## Linked entities

- **Genes:** GZMH (granzyme H) [NCBI Gene 2999], cspA (cold shock protein A) [NCBI Gene 885837]
- **Proteins:** GZMH (granzyme H), cspA (cold shock protein A)
- **Chemicals:** bile acid (PubChem CID 439520)
- **Species:** Clostridioides difficile (taxon 1496)

## Full-text entities

- **Diseases:** CDDM (MESH:D003015), infection (MESH:D007239)
- **Chemicals:** Tween 20 (MESH:D011136), CaCl2 (MESH:D002122), urea (MESH:D014508), glycerol (MESH:D005990), acid (MESH:D000143), lithium sulfate (MESH:C054097), TA (MESH:D013656), PVDF (MESH:C024865), agar (MESH:D000362), PBS (MESH:D007854), thiourea (MESH:D013890), CO2 (MESH:D002245), dithiothreitol (MESH:D004229), bile acid (MESH:D001647), morpholinoethane sulfonic acid (MESH:C004550), HEPES (MESH:D006531), divalent cation (MESH:D002413), cefoxitin (MESH:D002440), H2 (MESH:D006859), alanine (MESH:D000409), NaCl (MESH:D012965), water (MESH:D014867), imidazole (MESH:C029899), ampicillin (MESH:D000667), ethylene glycol (MESH:D019855), kanamycin (MESH:D007612), calcium (MESH:D002118), glutamate (MESH:D018698), N2 (MESH:D009584), SDS (MESH:D012967), glucose (MESH:D005947), sugar (MESH:D000073893), HCl (MESH:D006851), uracil (MESH:D014498), bromophenol blue (MESH:D001978), amino acid (MESH:D000596), thiamphenicol (MESH:D013839), inositol hexakisphosphate (MESH:D010833), CPD (-), PEG (MESH:D011092), chloramphenicol (MESH:D002701), L-cysteine (MESH:D003545), magnesium chloride (MESH:D015636), His6 (MESH:C471213), cation (MESH:D002412), Gly (MESH:D005998)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Clostridium septicum (species) [taxon 1504], Clostridioides difficile (species) [taxon 1496], Escherichia coli BL21(DE3) (strain) [taxon 469008], Clostridium perfringens (species) [taxon 1502], Clostridia (class) [taxon 186801], Bacillus subtilis (species) [taxon 1423], Escherichia coli DH5[alpha] (strain) [taxon 668369], Vibrio cholerae (species) [taxon 666]
- **Mutations:** T1098E, Arg456, Q516, Q1094A, S18A, T520E, Gln1094, Q1094E, S12A, S14D, T1098A, C with 225, S18, S19C, R456A, S14, Thr1098, Y1092E, S14E, R1036A, T520A, S13A, S11A
- **Cell lines:** pMTL-YN1C — Rattus norvegicus (Rat), Hybridoma (CVCL_8985), BL21(DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), HB101 — Mus musculus (Mouse), Hybridoma (CVCL_J815)

## Full text

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## Figures

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## References

62 references — full list in the complete paper: https://tomesphere.com/paper/PMC12880746/full.md

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Source: https://tomesphere.com/paper/PMC12880746