# A multifaceted analysis of OTUD5 integrated MAVS in innate immunity of Primary Biliary Cholangitis

**Authors:** Ran Chen, Yan Sun, Wenlin Tai, Muhammad Salman Bashir, Muhammad Salman Bashir, Muhammad Salman Bashir

PMC · DOI: 10.1371/journal.pone.0342306 · PLOS One · 2026-02-06

## TL;DR

This study explores the role of OTUD5 and its interaction with MAVS in the immune response of patients with Primary Biliary Cholangitis, suggesting a potential new target for diagnosis and treatment.

## Contribution

The study identifies OTUD5-MAVS interaction in macrophage subset 11 as a novel potential therapeutic target for PBC.

## Key findings

- OTUD5 and MAVS expression is increased in liver tissues of PBC patients compared to healthy controls.
- High OTUD5-MAVS expression is observed in subpopulation 11 mononuclear macrophages in PBC patients.
- Knocking down OTUD5 reduces the expression of both OTUD5 and MAVS in RAW264.7 cells.

## Abstract

Primary biliary cholangitis (PBC) is a chronic autoimmune liver disease characterized by cholestasis caused by intrahepatic small bile duct injury. Promoting the molecular mechanism of OTU deubiquitinase 5 (OTUD5) in the treatment of PBC requires further exploration. This study unraveled the molecular underpinnings of PBC through bio-informatics analysis and experimental verification for the development of targeted therapeutic strategies.

This study screened immune-related genes and validated their expression patterns in whole blood of patients with PBC using microarray based on GEO datasets. The expression level of OTU deubiquitinase 5 (OTUD5) was validated in peripheral blood samples using RT-qPCR and immunofluorescence. Subsequently, proteomic bioinformatics analyses were conducted utilizing STRING and InBio Discover databases to predict interactions with the mitochondrial antiviral signalling protein (MAVS). Furthermore, immunochemical and immunofluorescence analyses of MAVS expression in liver tissues were conducted with a thorough analysis of immune cell infiltration specific to the disease by utilizing single-cell RNA sequencing (scRNA-seq) technology in peripheral blood mononuclear cells (PBMCs) derived from both patients with PBC and healthy controls.

Compared with those of healthy controls, the liver tissues of patients with PBC presented increased NK cell activation, monocyte/mast cell numbers, and eosinophil numbers. Compared with those in 10 healthy controls, the expression of OTUD5 and MAVS was increased in 16 tissues of patients with PBC. High expression of OTUD5-MAVS in subpopulation 11 mononuclear macrophages was screened by PBMC scRNA-seq, and mononuclear cells with the subgroup 11 phenotype presented highly differentiated characteristics. The expression of OTUD5 and MAVS was inhibited in RAW264.7 cells when OTUD5 was knocked down (P < 0.05).

This study focused on the overexpression of OTUD5 and its interaction with MAVS within macrophage subset 11 in patients with primary biliary cholangitis (PBC). The expression of OTUD5 and MAVS is increased in patients with PBC and is a potential target for the diagnosis and treatment of PBC.

## Linked entities

- **Genes:** OTUD5 (OTU deubiquitinase 5) [NCBI Gene 55593], MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506]
- **Diseases:** Primary Biliary Cholangitis (MONDO:0005388), PBC (MONDO:0005388)

## Full-text entities

- **Genes:** IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, TICAM1 (TIR domain containing adaptor molecule 1) [NCBI Gene 148022] {aka IIAE6, MyD88-3, PRVTIRB, TICAM-1, TRIF}, AIF1 (allograft inflammatory factor 1) [NCBI Gene 199] {aka AIF-1, IBA1, IRT-1, IRT1}, PRKCB (protein kinase C beta) [NCBI Gene 5579] {aka PKC-beta, PKCB, PKCI(2), PKCbeta, PRKCB1, PRKCB2}, UQCR10P1 (UQCR10 pseudogene 1) [NCBI Gene 644310], STAT4 (signal transducer and activator of transcription 4) [NCBI Gene 6775] {aka DPMC, SLEB11}, IKZF3 (IKAROS family zinc finger 3) [NCBI Gene 22806] {aka AIO, AIOLOS, IMD84, ZNFN1A3}, MAFB (MAF bZIP transcription factor B) [NCBI Gene 9935] {aka DURS3, KRML, MCTO}, HSPA9 (heat shock protein family A (Hsp70) member 9) [NCBI Gene 3313] {aka CRP40, CSA, EVPLS, GRP-75, GRP75, HEL-S-124m}, RXRA (retinoid X receptor alpha) [NCBI Gene 6256] {aka NR2B1, RXR-alpha, RXRalpha}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, MED1 (mediator complex subunit 1) [NCBI Gene 5469] {aka CRSP1, CRSP200, DRIP205, DRIP230, PBP, PPARBP}, TNFSF15 (TNF superfamily member 15) [NCBI Gene 9966] {aka TL1, TL1A, TNLG1B, VEGI, VEGI192A}, KLF4 (KLF transcription factor 4) [NCBI Gene 9314] {aka EZF, GKLF}, PQBP1 (polyglutamine binding protein 1) [NCBI Gene 10084] {aka MRX2, MRX55, MRXS3, MRXS8, NPW38, RENS1}, TCF7L2 (transcription factor 7 like 2) [NCBI Gene 6934] {aka TCF-4, TCF4}, SLC35A2 (solute carrier family 35 member A2) [NCBI Gene 7355] {aka CDG2M, CDGX, UDP-Gal-Tr, UGALT, UGAT, UGT}, TNFSF14 (TNF superfamily member 14) [NCBI Gene 8740] {aka CD258, HVEML, LIGHT, LTg}, CCL3L1 (C-C motif chemokine ligand 3 like 1) [NCBI Gene 6349] {aka 464.2, D17S1718, G0S19-2, LD78, LD78-beta(1-70), LD78BETA}, ABCG1 (ATP binding cassette subfamily G member 1) [NCBI Gene 9619] {aka ABC8, WHITE1}, OTUD5 (OTU deubiquitinase 5) [NCBI Gene 55593] {aka DUBA, MCAND}, DLAT (dihydrolipoamide S-acetyltransferase) [NCBI Gene 1737] {aka DLTA, E2, PBC, PDC-E2, PDCE2}, GRIPAP1 (GRIP1 associated protein 1) [NCBI Gene 56850] {aka GRASP-1}, KLF10 (KLF transcription factor 10) [NCBI Gene 7071] {aka EGR-alpha, EGRA, TIEG, TIEG1}, Mavs (mitochondrial antiviral signaling protein) [NCBI Gene 228607] {aka D430028G21Rik, IPS-1, Visa, cardif}, Otud5 (OTU domain containing 5) [NCBI Gene 54644] {aka DUBA, DXImx46e, Sfc7}, SOCS1 (suppressor of cytokine signaling 1) [NCBI Gene 8651] {aka AISIMD, CIS1, CISH1, JAB, SOCS-1, SSI-1}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, CAMKK2 (calcium/calmodulin dependent protein kinase kinase 2) [NCBI Gene 10645] {aka CAMKK, CAMKKB}, POU2F2 (POU class 2 homeobox 2) [NCBI Gene 5452] {aka OCT2, OTF2, Oct-2}, SPIB (Spi-B transcription factor) [NCBI Gene 6689] {aka SPI-B}, PIM2 (Pim-2 proto-oncogene, serine/threonine kinase) [NCBI Gene 11040], CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, LBP (lipopolysaccharide binding protein) [NCBI Gene 3929] {aka BPIFD2}, KCND1 (potassium voltage-gated channel subfamily D member 1) [NCBI Gene 3750] {aka KV4.1}, TIMM17B (translocase of inner mitochondrial membrane 17B) [NCBI Gene 10245] {aka DXS9822, JM3, TIM17B}, LST1 (leukocyte specific transcript 1) [NCBI Gene 7940] {aka B144, D6S49E, LST-1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, IFITM3 (interferon induced transmembrane protein 3) [NCBI Gene 10410] {aka 1-8U, DSPA2b, IP15}, ARID3A (AT-rich interaction domain 3A) [NCBI Gene 1820] {aka BRIGHT, DRIL1, DRIL3, E2FBP1}, CCR1 (C-C motif chemokine receptor 1) [NCBI Gene 1230] {aka CD191, CKR-1, CKR1, CMKBR1, HM145, MIP1aR}, DUOX2 (dual oxidase 2) [NCBI Gene 50506] {aka LNOX2, NOXEF2, P138-TOX, TDH6, THOX2}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, STK11IP (serine/threonine kinase 11 interacting protein) [NCBI Gene 114790] {aka LIP1, LKB1IP, STK11IP1}, IFT38 (intraflagellar transport 38) [NCBI Gene 23059] {aka CFAP22, CLUAP1, FAP22}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL12A (interleukin 12A) [NCBI Gene 3592] {aka CLMF, IL-12A, NFSK, NKSF1, P35}, PRKX (protein kinase cAMP-dependent X-linked catalytic subunit) [NCBI Gene 5613] {aka PKX1}, MRPL19 (mitochondrial ribosomal protein L19) [NCBI Gene 9801] {aka L15mt, L19mt, MRP-L15, MRP-L19, RLX1, RPML15}, MIEN1 (migration and invasion enhancer 1) [NCBI Gene 84299] {aka C17orf37, C35, ORB3, RDX12, XTP4}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, IFI30 (IFI30 lysosomal thiol reductase) [NCBI Gene 10437] {aka GILT, IFI-30, IP-30, IP30}, UAP1L1 (UDP-N-acetylglucosamine pyrophosphorylase 1 like 1) [NCBI Gene 91373], MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506] {aka CARDIF, IPS-1, IPS1, VISA}, TNFAIP3 (TNF alpha induced protein 3) [NCBI Gene 7128] {aka A20, AIFBL1, AISBL, OTUD7C, TNFA1P2}, POU2AF1 (POU class 2 homeobox associating factor 1) [NCBI Gene 5450] {aka BOB1, OBF-1, OBF1, OCAB}, IRF5 (interferon regulatory factor 5) [NCBI Gene 3663] {aka SLEB10}
- **Diseases:** infection (MESH:D007239), Biliary CholangitisPLOS (MESH:D001658), autoimmune diseases (MESH:D001327), Biliary Cholangitis (MESH:D008105), portal hypertension (MESH:D006975), cirrhosis (MESH:D005355), intrahepatic small bile duct injury (MESH:D002780), RA (MESH:D001172), bile duct diseases (MESH:D001649), PSC (MESH:D015209), SLE (MESH:D008180), cholestasis (MESH:D002779), hepatic (MESH:D056486), Autoimmune Liver Disease (MESH:D008107), necrosis factor (MESH:D009336), inflammation (MESH:D007249)
- **Chemicals:** SDS (MESH:D012967), polybrene (MESH:D006583), formalin (MESH:D005557), DAPI (MESH:C007293), obeticholic acid (MESH:C464660), UDCA (MESH:D014580), MUS-944 (-), citrate (MESH:D019343), OCA (MESH:C034482), oil (MESH:D009821), water (MESH:D014867), saline (MESH:D012965)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.Leu239Pro, serine/threonine
- **Cell lines:** PSC-B — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_5622), RAW264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), LV3 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_0C20), Mus-944 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z925)

## Full text

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## Figures

11 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12880646/full.md

## References

47 references — full list in the complete paper: https://tomesphere.com/paper/PMC12880646/full.md

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Source: https://tomesphere.com/paper/PMC12880646