# Dual-Color Expansion Microscopy of Membrane Proteins Using Bioorthogonal Labeling

**Authors:** Steven Edwards, Birthe Meineke, Sebastian Bauer, Hans Blom, Simon Elsässer, Hjalmar Brismar

PMC · DOI: 10.1021/acs.nanolett.5c05301 · Nano Letters · 2026-01-22

## TL;DR

This paper introduces a new method combining bioorthogonal labeling and expansion microscopy to achieve high-resolution imaging of membrane proteins at the nanoscale.

## Contribution

The novel approach integrates noncanonical amino acid labeling with expansion microscopy for dual-color super-resolution imaging.

## Key findings

- The method enables precise visualization of Na,K-ATPase α1 and β1 subunits in expanded HEK 293T cells.
- Validation via STED imaging confirms the accuracy of ncAA labeling in unexpanded cells.
- The framework supports multiplexed, nanoscale biological imaging.

## Abstract

With recent advances in fluorescence microscopy, resolution
is
often limited by the size of the label and the resulting linkage error,
rather than the microscope itself. Site-specific incorporation of
noncanonical amino acids (ncAAs) combined with bioorthogonal click
chemistry provides a powerful tool for fluorescent protein labeling,
overcoming the spatial uncertainty inherent to antibody-based probes.
Here, we present a method to further improve labeling precision by
combining ncAA labeling with expansion microscopy (ExM) for dual-color
super-resolution imaging. After optimizing labeling procedures and
fluorophore selection, we visualize and resolve the nanoscale distribution
of Na,K-ATPase α1 and β1 subunits
in expanded HEK 293T cells. We validate our approach by super-resolution
STED imaging of the ncAA labeled β1 subunit in unexpanded
cells. This work presents a strong framework for multiplexed, high-resolution
imaging, suggesting that ncAA labeling combined with ExM enables biological
imaging at the nanometer scale.

## Full-text entities

- **Genes:** BCL2A1 (BCL2 related protein A1) [NCBI Gene 597] {aka ACC-1, ACC-2, ACC1, ACC2, BCL2L5, BFL1}, TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, AARS1 (alanyl-tRNA synthetase 1) [NCBI Gene 16] {aka AARS, CMT2N, DEE29, EIEE29, HDLS2, TTD8}, TAC1 (tachykinin precursor 1) [NCBI Gene 6863] {aka Hs.2563, NK2, NKNA, NPK, TAC2}, MS4A1 (membrane spanning 4-domains A1) [NCBI Gene 931] {aka B1, Bp35, CD20, CVID5, FMC7, LEU-16}
- **Chemicals:** SDS (MESH:D012967), amino acid (MESH:D000596), alkyne (MESH:D000480), azide (MESH:D001386), AF647-picolyl azide (-), AF647 (MESH:C569686), PFA (MESH:C003043), rhodamine (MESH:D012235), acids (MESH:D000143), polyelectrolyte (MESH:D000071228), water (MESH:D014867), Cu(I) (MESH:C073870)
- **Species:** Methanosarcina mazei (species) [taxon 2209], Macrotrachela sp. MA (species) [taxon 1659206]
- **Mutations:** T121TAG
- **Cell lines:** HEK 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HEK239T — Homo sapiens (Human), Lung squamous cell carcinoma, Cancer cell line (CVCL_A2AI)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12879918/full.md

## References

31 references — full list in the complete paper: https://tomesphere.com/paper/PMC12879918/full.md

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Source: https://tomesphere.com/paper/PMC12879918