# Bidirectional Communication Between Astrocytes and Neurons via Extracellular Vesicles: A Multi‐Omics Approach

**Authors:** Daria Hajka, Paulina Żebrowska‐Różańska, Katarzyna Romańczuk, Jacek R. Wiśniewski, Łukasz Łaczmański, Norbert Łodej, Krzysztof J. Pawlik, Dariusz Rakus, Agnieszka Gizak

PMC · DOI: 10.1111/jnc.70373 · Journal of Neurochemistry · 2026-02-06

## TL;DR

This study shows how astrocytes and neurons in the mouse brain communicate using tiny vesicles, changing each other's gene activity and protein content.

## Contribution

The paper introduces a multi-omics approach to reveal bidirectional communication between astrocytes and neurons via extracellular vesicles.

## Key findings

- EVs from both astrocytes and neurons caused specific changes in gene activity related to cell function and energy.
- Proteomic analysis showed that EV cargo changes dynamically based on cell interactions in co-cultures.
- The study highlights how EVs mediate communication by altering gene expression in target cells.

## Abstract

Cells modulate their physiology through multiple mechanisms—cell–cell contacts and autocrine/paracrine signaling, including via extracellular vesicles (EVs). In this study, we exposed mouse hippocampal astrocyte and neuron monocultures to EVs from the opposing cell type and subsequently performed RNA sequencing to examine transcriptomic changes. Mass spectrometry was used to analyze the proteomes of EVs from astrocyte and neuron monocultures, as well as from astrocyte‐neuron co‐cultures, to investigate the molecular basis of EVs‐induced transcriptomic alterations and to determine the extent to which cells adjust EV cargo in response to feedback signals. EVs secreted by both cell types induced cell‐specific transcriptomic changes in target cells, related to migration, proliferation, differentiation, and energy production. Unique changes in the proteome of EVs from astrocytic‐neuronal co‐cultures highlighted the dynamic regulation of signaling molecule secretion via cell interactions.

Schematic diagram illustrating the communication between mouse hippocampal astrocytes and neurons through extracellular vesicles (EVs). The illustration highlights unique proteins secreted by each cell type within EVs, with vesicle size proportional to the concentration of secreted proteins. Additionally, within the cells, selected genes that are upregulated in response to EVs from the opposite cell type are marked with red arrows, while those downregulated are marked with blue arrows. AEVs, astrocytic extracellular vesicles; NEVs, neuronal extracellular vesicles.

## Linked entities

- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, Txnrd1 (thioredoxin reductase 1) [NCBI Gene 50493] {aka TR, TR1, TrxR1}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Rock2 (Rho-associated coiled-coil containing protein kinase 2) [NCBI Gene 19878] {aka B230113H15Rik, ROKalpha, Rho-kinase, Rock-II, Rock2m, mKIAA0619}, Pgam1 (phosphoglycerate mutase 1) [NCBI Gene 18648] {aka 2310050F24Rik, Pgam-1}, Grin1 (glutamate receptor, ionotropic, NMDA1 (zeta 1)) [NCBI Gene 14810] {aka GluN1, GluRdelta1, GluRzeta1, M100174, NMD-R1, NMDAR1}, Ldhc (lactate dehydrogenase C) [NCBI Gene 16833] {aka LDH-C4, Ldh-3, Ldh-x, Ldh3, Ldhc4}, ATP8 (ATP synthase F0 subunit 8) [NCBI Gene 17706], Srf (serum response factor) [NCBI Gene 20807], Pygl (liver glycogen phosphorylase) [NCBI Gene 110095], Phgdh (3-phosphoglycerate dehydrogenase) [NCBI Gene 236539] {aka 3-PGDH, 3PGDH, 4930479N23, A10, PGAD, PGD}, UGP2 (UDP-glucose pyrophosphorylase 2) [NCBI Gene 7360] {aka DEE83, EIEE83, SVUGP2, UDPG, UDPGP, UDPGP2}, Gpd2 (glycerol phosphate dehydrogenase 2, mitochondrial) [NCBI Gene 14571] {aka GPDH, Gdm1, Gpd-m, Gpdh-m, TISP38}, Glud1 (glutamate dehydrogenase 1) [NCBI Gene 14661] {aka Gdh-X, Glud, Gludl}, Ncam1 (neural cell adhesion molecule 1) [NCBI Gene 17967] {aka CD56, E-NCAM, NCAM-1, Ncam}, Rac1 (Rac family small GTPase 1) [NCBI Gene 19353] {aka D5Ertd559e}, Fus (fused in sarcoma) [NCBI Gene 233908] {aka D430004D17Rik, D930039C12Rik, Fus1, Tls}, Sfpq (splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)) [NCBI Gene 71514] {aka 1110004P21Rik, 2810416M14Rik, 5730453G22Rik, 9030402K04Rik, D4Ertd314e, Gm12940}, Dctn2 (dynactin 2) [NCBI Gene 69654] {aka 2310042E05Rik, C130077D06Rik, DCTN-50, GMP23-48K, RBP50, p50}, Ywhab (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide) [NCBI Gene 54401] {aka 1300003C17Rik, 14-3-3b}, Plekhf1 (pleckstrin homology domain containing, family F (with FYVE domain) member 1) [NCBI Gene 72287] {aka 1810013P09Rik, APPD, LAPF, PHAFIN1, ZFYVE15}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, Ppm1b (protein phosphatase 1B, magnesium dependent, beta isoform) [NCBI Gene 19043] {aka PP2CB}, Itga3 (integrin alpha 3) [NCBI Gene 16400] {aka CD49C, GAPB3}, Coa7 (cytochrome c oxidase assembly factor 7) [NCBI Gene 69893] {aka 2010305A19Rik, D4Ertd796e, Selrc1}, Lztr1 (leucine-zipper-like transcriptional regulator, 1) [NCBI Gene 66863] {aka 1200003E21Rik}, Slc16a3 (solute carrier family 16 (monocarboxylic acid transporters), member 3) [NCBI Gene 80879] {aka Mct3, Mct4}, Rtn4 (reticulon 4) [NCBI Gene 68585] {aka 1110020G17Rik, ASY, C130026I10Rik, NOGO, NSP-CL, NgA}, Nap1l1 (nucleosome assembly protein 1-like 1) [NCBI Gene 53605] {aka D10Ertd68e, NAP-1}, Cd9 (CD9 antigen) [NCBI Gene 12527] {aka Tspan29}, Hk2 (hexokinase 2) [NCBI Gene 15277] {aka HKII}, Aldoa (aldolase A, fructose-bisphosphate) [NCBI Gene 11674] {aka Aldo-1, Aldo1}, Dbi (diazepam binding inhibitor) [NCBI Gene 13167] {aka ACBD1, Acbp, EP, endozepine}, Matr3 (matrin 3) [NCBI Gene 17184] {aka 1110061A14Rik, 2810017I02Rik, D030046F20Rik, mKIAA0723}, Ezr (ezrin) [NCBI Gene 22350] {aka Vil2, p81}, ASRGL1 (asparaginase and isoaspartyl peptidase 1) [NCBI Gene 80150] {aka ALP, ALP1, CRASH}, Tslp (thymic stromal lymphopoietin) [NCBI Gene 53603], Ctnna1 (catenin alpha 1) [NCBI Gene 12385] {aka 2010010M04Rik, Catna1}, Ptprm (protein tyrosine phosphatase receptor type M) [NCBI Gene 19274] {aka RPTPmu, mKIAA4044}, Ppcdc (phosphopantothenoylcysteine decarboxylase) [NCBI Gene 66812] {aka 1810057I13Rik, 8430432M10Rik}, Gpm6b (glycoprotein m6b) [NCBI Gene 14758] {aka Gpm6, M6B}, PYGB (glycogen phosphorylase B) [NCBI Gene 5834] {aka GPBB}, Igsf8 (immunoglobulin superfamily, member 8) [NCBI Gene 140559] {aka ESTM34, EWI-2, KCT-4, PGRL}, Mgll (monoglyceride lipase) [NCBI Gene 23945] {aka Magl, Mgl}, Ndor1 (NADPH dependent diflavin oxidoreductase 1) [NCBI Gene 78797] {aka 4930447P04Rik, NR1, Ndor, Tg(UBC-cre/ERT2)1Ejb, Ubc-cre}, Trnp1 (TMF1-regulated nuclear protein 1) [NCBI Gene 69539] {aka 2300002D11Rik, Trnp}, Apof (apolipoprotein F) [NCBI Gene 103161] {aka LVIF}, Gpr37 (G protein-coupled receptor 37) [NCBI Gene 14763] {aka Pael-R}, Ugp2 (UDP-glucose pyrophosphorylase 2) [NCBI Gene 216558] {aka UDPGP, UGPase}, Atp5f1a (ATP synthase F1 subunit alpha) [NCBI Gene 11946] {aka Atp5a1, Atpm, D18Ertd206e, Mom2}, Cntn1 (contactin 1) [NCBI Gene 12805] {aka CNTN, F3cam, usl}, Vdac1 (voltage-dependent anion channel 1) [NCBI Gene 22333] {aka Vdac5, mVDAC1, mVDAC5}, Crmp1 (collapsin response mediator protein 1) [NCBI Gene 12933] {aka CRMP-1, DRP-1, Dpysl1, ULIP-3, Ulip3}, Hsp86-ps2 (heat shock protein 86, pseudogene 2) [NCBI Gene 111042] {aka 86kDa, Hsp86-3, Hsp90}, H2bc4 (H2B clustered histone 4) [NCBI Gene 68024] {aka 2610022J01Rik, H2bc6, H2bc8, H2bfs, Hist1h2bc}, Ank2 (ankyrin 2, brain) [NCBI Gene 109676] {aka 100043364, Ank-2, Gm4392}, Rbms1 (RNA binding motif, single stranded interacting protein 1) [NCBI Gene 56878] {aka 2600014B10Rik, MSSP-1, MSSP-2, MSSP-3, YC1}, Dlst (dihydrolipoamide S-succinyltransferase) [NCBI Gene 78920] {aka 1600017E01Rik, 4632413C10Rik, 4930529O08Rik, DLTS}, Hspd1 (heat shock protein 1 (chaperonin)) [NCBI Gene 15510] {aka 60kDa, CPN60, HSP-60, HSP-65, Hsp60}
- **Diseases:** retinitis pigmentosa (MESH:D012174), FTD (MESH:D057180), neuronal (MESH:D009410), retinal photoreceptor degeneration (MESH:D012162), seizures (MESH:D012640), neurodegeneration (MESH:D019636), epilepsy (MESH:D004827), RIN (MESH:D012327), autism (MESH:D001321), ataxia (MESH:D001259), ALS (MESH:D000690), neurodevelopmental disorders (MESH:D002658), MISEV (MESH:C535509), neuroinflammation (MESH:D000090862), neuronal apoptosis (MESH:D065703), intellectual disability (MESH:D008607)
- **Chemicals:** AEV (-), nitric oxide (MESH:D009569), PBS (MESH:D007854), glutathione (MESH:D005978), lipid (MESH:D008055), TCA (MESH:D014233), Ara-C (MESH:D003561), glutamate (MESH:D018698), carbon (MESH:D002244), fatty acid (MESH:D005227), glycogen (MESH:D006003), calcium (MESH:D002118), glutamine (MESH:D005973), penicillin (MESH:D010406), NA (MESH:D012964), sodium bicarbonate (MESH:D017693), streptomycin (MESH:D013307), N (MESH:D009584), DTT (MESH:D004229), SDS (MESH:D012967), acetonitrile (MESH:C032159), pentose phosphate (MESH:D010428), lactate (MESH:D019344), Peptide (MESH:D010455), formvar (MESH:C013215), glucose (MESH:D005947), pyruvate (MESH:D019289), coenzyme A (MESH:D003065), water (MESH:D014867), hydrogen peroxide (MESH:D006861), copper (MESH:D003300), ROS (MESH:D017382), FBS (MESH:C523711), succinyl-CoA (MESH:C012046), L-aspartate (MESH:D001224), ATP (MESH:D000255), uranyl acetate (MESH:C005460)
- **Species:** Homo sapiens (human, species) [taxon 9606], Xenopus laevis (African clawed frog, species) [taxon 8355], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12879276/full.md

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12879276/full.md

## References

75 references — full list in the complete paper: https://tomesphere.com/paper/PMC12879276/full.md

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Source: https://tomesphere.com/paper/PMC12879276