# T Cell Exhaustion in Hepatocellular Carcinoma: A Substantial Barrier in Immunotherapy

**Authors:** Kosar Nouri, Negar Asadollahei, Yasamin Haghir‐Sharif‐Zamini, Homeyra Seydi, Mahsa Salehi, Mehrnaz Mesdaghi, Mustapha Najimi, Massoud Vosough

PMC · DOI: 10.1111/jcmm.71044 · Journal of Cellular and Molecular Medicine · 2026-02-06

## TL;DR

This review discusses how T cell exhaustion limits immunotherapy effectiveness in liver cancer and explores strategies to overcome it.

## Contribution

The paper provides a comprehensive overview of T cell exhaustion mechanisms and therapeutic strategies specific to hepatocellular carcinoma.

## Key findings

- T cell exhaustion in HCC is driven by epigenetic, metabolic, and immunosuppressive factors.
- Combination therapies targeting multiple exhaustion pathways show promise for improving immunotherapy outcomes.
- Immune checkpoint blockade and metabolic reprogramming are emerging strategies to reverse T cell dysfunction.

## Abstract

Hepatocellular carcinoma (HCC), accounting for over 90% of primary liver cancers, remains a major global challenge for healthcare professionals. While immunotherapy has transformed the landscape of cancer treatment, its success is often limited by immune resistance, particularly through T cell exhaustion which remains a major barrier to effective immune responses in solid tumours, including HCC. As tumours progress, T cells undergo a gradual loss of functionality due to continuous antigen exposure and fail to exert effective anti‐tumour responses. During this process, alterations in the epigenome, transcriptome, signalling pathways, and tumour metabolome, in addition to interactions with other cells in the tumour microenvironment, efficiently contribute to T cell exhaustion. Restoring T cell function brings hope for improving therapy outcomes and providing new treatment modalities for HCC patients. In this review, we explore the key cellular and molecular mechanisms driving T cell exhaustion, including the roles of immunosuppressive cells, metabolic stress, and epigenetic alterations focusing on HCC. We also discuss current and emerging strategies aimed at preventing or reversing T cell exhaustion, such as epigenetic modulation, immune checkpoint blockade, metabolic reprogramming, and combination therapies. Understanding these interconnected pathways is critical for designing more effective immunotherapy‐based approaches for liver cancer.

## Linked entities

- **Diseases:** Hepatocellular carcinoma (MONDO:0007256), liver cancer (MONDO:0002691)

## Full-text entities

- **Genes:** KAT7 (lysine acetyltransferase 7) [NCBI Gene 11143] {aka HBO1, HBOA, MYST2, ZC2HC7}, NECTIN2 (nectin cell adhesion molecule 2) [NCBI Gene 5819] {aka CD112, HVEB, PRR2, PVRL2, PVRR2}, IL27RA (interleukin 27 receptor subunit alpha) [NCBI Gene 9466] {aka CRL1, IL-27RA, IL27R, TCCR, WSX1, zcytor1}, Xdh (xanthine dehydrogenase) [NCBI Gene 22436] {aka XO, Xor, Xox-1, Xox1}, CD80 (CD80 molecule) [NCBI Gene 941] {aka B7, B7-1, B7.1, BB1, CD28LG, CD28LG1}, BAG6 (BAG cochaperone 6) [NCBI Gene 7917] {aka BAG-6, BAT3, D6S52E, G3}, KITLG (KIT ligand) [NCBI Gene 4254] {aka DCUA, DFNA69, FPH2, FPHH, KL-1, Kitl}, BCL6 (BCL6 transcription repressor) [NCBI Gene 604] {aka BCL5, BCL6A, LAZ3, ZBTB27, ZNF51}, Mir215 (microRNA 215) [NCBI Gene 387211] {aka Mirn215, mir-215, mmu-mir-215}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CXCR6 (C-X-C motif chemokine receptor 6) [NCBI Gene 10663] {aka BONZO, CD186, CDw186, STRL33, TYMSTR}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 100127359] {aka FRAP1}, TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 100624099], EOMES (eomesodermin) [NCBI Gene 8320] {aka TBR2}, PDCD1 (programmed cell death 1) [NCBI Gene 100533201], MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, PIK3CD (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta) [NCBI Gene 5293] {aka APDS, IMD14, IMD14A, IMD14B, P110DELTA, PI3K}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, SP1 (Sp1 transcription factor) [NCBI Gene 6667], Tec (tec protein tyrosine kinase) [NCBI Gene 21682], LAG3 (lymphocyte activating 3) [NCBI Gene 100125962] {aka CD223, LAG-3}, CXCL13 (C-X-C motif chemokine ligand 13) [NCBI Gene 10563] {aka ANGIE, ANGIE2, BCA-1, BCA1, BLC, BLR1L}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, TOX (thymocyte selection associated high mobility group box) [NCBI Gene 9760] {aka TOX1}, CCR7 (C-C motif chemokine receptor 7) [NCBI Gene 1236] {aka BLR2, CC-CKR-7, CCR-7, CD197, CDw197, CMKBR7}, MEF2D (myocyte enhancer factor 2D) [NCBI Gene 4209], SLAMF6 (SLAM family member 6) [NCBI Gene 114836] {aka CD352, KALI, KALIb, Ly108, NTB-A, NTBA}, FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, SIRT7 (sirtuin 7) [NCBI Gene 51547] {aka SIR2L7}, BCL11B (BCL11 transcription factor B) [NCBI Gene 64919] {aka ATL1, ATL1-alpha, ATL1-beta, ATL1-delta, ATL1-gamma, CTIP-2}, CCAT1 (colon cancer associated transcript 1) [NCBI Gene 100507056] {aka CARLO5, CARLo-5, onco-lncRNA-40}, GDNF (glial cell derived neurotrophic factor) [NCBI Gene 2668] {aka ATF, ATF1, ATF2, HFB1-GDNF, HSCR3}, BAG6 (BAG cochaperone 6) [NCBI Gene 100153950] {aka BAT3}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Idh3a (isocitrate dehydrogenase 3 (NAD+) alpha) [NCBI Gene 67834] {aka 1110003P10Rik, 1500012E04Rik}, CXCR3 (C-X-C motif chemokine receptor 3) [NCBI Gene 2833] {aka CD182, CD183, CKR-L2, CMKAR3, GPR9, IP10-R}, BACH2 (BACH transcriptional regulator 2) [NCBI Gene 60468] {aka BTBD25, IMD60}, CD3E (CD3 epsilon subunit of T-cell receptor complex) [NCBI Gene 916] {aka CD3epsilon, IMD18, T3E, TCRE}, TRIM63 (tripartite motif containing 63) [NCBI Gene 84676] {aka CMH31, IRF, MURF1, MURF2, RNF28, SMRZ}, PRRT2 (proline rich transmembrane protein 2) [NCBI Gene 112476] {aka BFIC2, BFIS2, DSPB3, DYT10, EKD1, FICCA}, TNFRSF25 (TNF receptor superfamily member 25) [NCBI Gene 8718] {aka APO-3, DDR3, DR3, LARD, TNFRSF12, TR3}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 397286], IRF8 (interferon regulatory factor 8) [NCBI Gene 3394] {aka H-ICSBP, ICSBP, ICSBP1, IMD32A, IMD32B, IRF-8}, IRF9 (interferon regulatory factor 9) [NCBI Gene 10379] {aka IRF-9, ISGF3, ISGF3G, p48}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, Yap1 (yes-associated protein 1) [NCBI Gene 22601] {aka Yap, Yap65, Yki, Yorkie}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, SELL (selectin L) [NCBI Gene 6402] {aka CD62L, LAM1, LECAM1, LEU8, LNHR, LSEL}, PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743] {aka COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2}, TCF7 (transcription factor 7) [NCBI Gene 6932] {aka TCF-1}, FGL1 (fibrinogen like 1) [NCBI Gene 2267] {aka HFREP1, HP-041, HPS, LFIRE-1, LFIRE1}, LEF1 (lymphoid enhancer binding factor 1) [NCBI Gene 51176] {aka ECTD1, ECTD17, LEF-1, TCF10, TCF1ALPHA, TCF7L3}, LAYN (layilin) [NCBI Gene 143903], LEO1 (LEO1 component of Paf1/RNA polymerase II complex) [NCBI Gene 123169] {aka RDL}, MYB (MYB proto-oncogene, transcription factor) [NCBI Gene 4602] {aka Cmyb, c-myb, c-myb_CDS, efg}, SLA-DRB1 (MHC class II histocompatibility antigen SLA-DRB1) [NCBI Gene 100153386] {aka DRB1, LA-DRB-c, LA-DRB-d, SLA-DRB, SLADRB}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932]
- **Diseases:** viral infection (MESH:D014777), chronic (MESH:D002908), prostate tumour (MESH:D011471), T (MESH:D001260), MDSCs (OMIM:601308), ITIM (MESH:D019292), death (MESH:D003643), B-cell lymphoma-extra-large (MESH:D016393), Disease (MESH:D004194), hypoxia (MESH:D000860), hepatitis (MESH:D056486), leukaemia (MESH:D015458), colon cancer (MESH:D015179), PDAC (MESH:D021441), MPC (OMIM:614741), bladder and breast cancer (MESH:D001943), TTP (MESH:D011697), Metabolic dysfunction (MESH:D008659), chronic liver injury (MESH:D056487), diarrhoea (MESH:D003967), TECs (MESH:D018295), pancreatic tumour (MESH:D010190), solid (MESH:D018250), infection (MESH:D007239), chronic hepatitis B (MESH:D019694), hepatitis C virus (HCV) infection (MESH:D006526), Hypertension (MESH:D006973), hypoxic (MESH:D002534), chronic hepatitis (MESH:D006521), melanoma (MESH:D008545), HCC tumour (MESH:D009369), Barcelona Clinic Liver Cancer (MESH:D006528), fibrosis (MESH:D005355), palmar-plantar erythrodysesthesia (MESH:C536338), cervical and bladder cancers (MESH:D001749), gastric cancer (MESH:D013274), liver cirrhosis (MESH:D008103), Toxicity (MESH:D064420), lymphomas (MESH:D008223)
- **Chemicals:** Cabozantinib (MESH:C558660), Inosine (MESH:D007288), 5-methylthioadenosine (MESH:C008500), 5-aza-2'-deoxycytidine (MESH:D000077209), regorafenib (MESH:C559147), Phosphatidylserine (MESH:D010718), ROS (MESH:D017382), ATP (MESH:D000255), Lenvatinib (MESH:C531958), oxygen (MESH:D010100), ipilimumab (MESH:D000074324), Atezolizumab (MESH:C000594389), Itaconate (MESH:C005229), TCA (MESH:D014233), Pembrolizumab (MESH:C582435), Bevacizumab (MESH:D000068258), calcium (MESH:D002118), Enasidenib (MESH:C000605269), Fatty acid (MESH:D005227), S-adenosylmethionine (MESH:D012436), Galunisertib (MESH:C557799), Ibuprofen (MESH:D007052), Rapamycin (MESH:D020123), Tivozanib (MESH:C553176), glucose (MESH:D005947), adenosine (MESH:D000241), Relatlimab (MESH:C000721227), Tryptophan (MESH:D014364), pyruvate (MESH:D019289), Nivolumab (MESH:D000077594), kynurenic acid (MESH:D007736), Immune checkpoint (-), methionine (MESH:D008715), Sorafenib (MESH:D000077157), Vistusertib (MESH:C585537), Taz (MESH:C000593333), 2-DG (MESH:D003847), Tremelimumab (MESH:C520704), lactate (MESH:D019344), Durvalumab (MESH:C000613593), Paclitaxel (MESH:D017239)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Hepatitis B virus (no rank) [taxon 10407], hepatitis C virus [taxon 11103]
- **Cell lines:** TEX — Homo sapiens (Human), Transformed cell line (CVCL_A5CF), TMEM — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_TS88), Hepa1-6 — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_0327), Huh-7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336), CAR-T — Mus musculus (Mouse), Transformed cell line (CVCL_WN86)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12877428/full.md

## References

205 references — full list in the complete paper: https://tomesphere.com/paper/PMC12877428/full.md

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Source: https://tomesphere.com/paper/PMC12877428