# MiRNAs shape mouse age-independent tissue adaptation to spaceflight via ECM and developmental pathways

**Authors:** Friederike Grandke, Shusruto Rishik, Viktoria Wagner, Annika Engel, Nicole Ludwig, Kruti Calcuttawala, Fabian Kern, Verena Keller, Marcin Krawczyk, Louis Stodieck, Virginia Ferguson, Amanda Roberts, Eckart Meese, Nicholas Schaum, Steven Quake, Tony Wyss-Coray, Andreas Keller

PMC · DOI: 10.1038/s41467-026-68737-1 · Nature Communications · 2026-02-05

## TL;DR

This study shows how miRNAs help mice adapt to spaceflight by changing gene activity in multiple organs, regardless of age.

## Contribution

The study identifies specific miRNA families that mediate spaceflight-induced tissue adaptations through extracellular matrix and developmental pathways.

## Key findings

- MiRNAs like MIR-17/92 and MIR-1/133 drive molecular changes in organs like liver, pancreas, heart, brain, spleen, and thymus during spaceflight.
- Age-independent changes are more prominent than age-dependent ones, with MIR-8, MIR-154, and MIR-15 families affecting mesenteric adipose tissue and pancreas.
- The findings highlight how miRNAs regulate mammalian gene expression in microgravity environments.

## Abstract

As human space exploration accelerates, understanding the organism-wide molecular effects of longer spaceflight in mammals becomes increasingly critical. Non-coding RNAs like miRNAs are key to regulating this landscape. We thus analyze 686 small RNA samples of female mice from 13 solid organs at 3 and 8 months of age, after at least 3 weeks on the International Space Station and compare them to earth-bound controls. We observe significant spaceflight effects in systemic tissue remodeling pathways along the Fat-Liver-Pancreas axis and in heart, brain, spleen and thymus. The MIR-17/92 and MIR-1/133 families drive distinct molecular changes through specific gene targeting. Age-dependent changes, smaller in magnitude compared to age-independent changes, primarily involve tissue remodeling through MIR-8, MIR-154 and MIR-15 families in mesenteric adipose tissue, pancreas, and diaphragm. Our findings provide evidence on how spaceflight regulates mammalian gene expression in preparation for interplanetary spaceflight.

Understanding the organism-wide molecular effects of spaceflight becomes increasingly critical as space exploration accelerates. Here, the authors show that miRNAs mediate microgravity-induced adaptations via extracellular matrix, DNA damage and developmental pathways, as shown by small RNA profiling in 13 organs of mice during and after spaceflight.

## Linked entities

- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Mir133b (microRNA 133b) [NCBI Gene 723817] {aka Mirn133b, mir-133b}, Flt1 (FMS-like tyrosine kinase 1) [NCBI Gene 14254] {aka Flt-1, VEGFR-1, VEGFR1, sFlt1}, Baat (bile acid-Coenzyme A: amino acid N-acyltransferase) [NCBI Gene 12012] {aka BAT}, Stx6 (syntaxin 6) [NCBI Gene 58244] {aka 2310039E05Rik, 2410005I16Rik}, Dgke (diacylglycerol kinase, epsilon) [NCBI Gene 56077] {aka DAGK6, DGK, DGK-epsilon}, Mir34b (microRNA 34b) [NCBI Gene 723849] {aka Mirn34b, mir-34b, mmu-mir-34b}, Mir196b (microRNA 196b) [NCBI Gene 723820] {aka Mirn196b, mir-196b}, Tfcp2l1 (transcription factor CP2-like 1) [NCBI Gene 81879] {aka 1810030F05Rik, 4932442M07Rik, Cp2l1, Crtr-1, D930018N21Rik, LBP-9}, Crim1 (cysteine rich transmembrane BMP regulator 1) [NCBI Gene 50766], Mir196a-1 (microRNA 196a-1) [NCBI Gene 387191] {aka Mirn196, Mirn196a-1, miR-196, mir-196a-1}, Mir20b (microRNA 20b) [NCBI Gene 723923] {aka Mirn20b, mir-20b, mmu-mir-20b}, Yipf4 (Yip1 domain family, member 4) [NCBI Gene 67864] {aka 2310034L04Rik}, MIR154 (microRNA 154) [NCBI Gene 406946] {aka MIRN154, mir-154}, Ago1 (argonaute RISC catalytic subunit 1) [NCBI Gene 236511] {aka Eif2c1}, Tead1 (TEA domain family member 1) [NCBI Gene 21676] {aka 2610024B07Rik, B230114H05Rik, Gtrgeo5, TEAD-1, TEF-1, Tcf13}, Smad9 (SMAD family member 9) [NCBI Gene 55994] {aka MADH6, Madh8, Madh9, Smad8}, Mir17 (microRNA 17) [NCBI Gene 723905] {aka Mirn17, mir-17, mmu-mir-17}, Tspan4 (tetraspanin 4) [NCBI Gene 64540] {aka D130042I01Rik, NAG-2, Tm4sf7, Tspan-4}, Cat2 (dominant cataract 2) [NCBI Gene 111335] {aka Cat-2, Nzc, Rop, Scat}, Glyat (glycine-N-acyltransferase) [NCBI Gene 107146] {aka A330009E03Rik, ACGNAT, CAT, GAT}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Lcor (ligand dependent nuclear receptor corepressor) [NCBI Gene 212391] {aka 3110023F06Rik, A630025C20Rik, Gm340, Mlr2, mKIAA1795}, Mat1a (methionine adenosyltransferase 1A) [NCBI Gene 11720] {aka AdoMet, Ams, MAT, MATA1, SAMS, SAMS1}, Bsn (bassoon) [NCBI Gene 12217], Itgb8 (integrin beta 8) [NCBI Gene 320910] {aka 4832412O06Rik, D630049N15}, Mir92b (microRNA 92b) [NCBI Gene 100124470] {aka Mirn92b, mir-92b, mmu-mir-92b}, Mir34c (microRNA 34c) [NCBI Gene 723932] {aka Mirn34c, mir-34c, mmu-mir-34c}, Mecom (MDS1 and EVI1 complex locus) [NCBI Gene 14013] {aka D630039M04Rik, Evi-1, Evi1, Jbo, Mds, Mds1}, Phf6 (PHD finger protein 6) [NCBI Gene 70998] {aka 2700007B13Rik, 4931428F02Rik, mKIAA1823}, MIR17HG (miR-17-92a-1 cluster host gene) [NCBI Gene 407975] {aka C13orf25, LINC00048, MIHG1, MIRH1, MIRHG1, NCRNA00048}, Lar (low antibody response) [NCBI Gene 104121], Eya4 (EYA transcriptional coactivator and phosphatase 4) [NCBI Gene 14051] {aka B130023L16Rik}, Ypel2 (yippee like 2) [NCBI Gene 77864] {aka 6430570G24, E130113K08Rik}, Meis1 (Meis homeobox 1) [NCBI Gene 17268] {aka C530044H18Rik, Evi8}, Tnfsf11 (tumor necrosis factor (ligand) superfamily, member 11) [NCBI Gene 21943] {aka Ly109l, ODF, OPGL, RANKL, Trance}, Mir20a (microRNA 20a) [NCBI Gene 387139] {aka Mir-20, Mirn20, Mirn20a, mir-20a, mmu-mir-20a}, Mir17hg (Mir17 host gene (non-protein coding)) [NCBI Gene 75957] {aka 5033413D16Rik, Mirhg1, mir-17-92}, Rarb (retinoic acid receptor, beta) [NCBI Gene 218772] {aka A830025K23, Hap, Nr1b2}, Mir124a-3 (microRNA 124a-3) [NCBI Gene 723951] {aka Mirn124a-3, mir-124-3, mir-124a-3}, Rorb (RAR-related orphan receptor beta) [NCBI Gene 225998] {aka Nr1f2, RZR-beta, RZRB, Rorbeta, hstp}, Mir154 (microRNA 154) [NCBI Gene 387172] {aka Mirn154, mir-154, mmu-mir-154}, Myb (Myb proto-oncogene, transcription factor) [NCBI Gene 17863] {aka c-myb}
- **Diseases:** Alzheimer (MESH:D000544), bone loss (MESH:D001847), HGC (MESH:D007815), cognitive impairment (MESH:D003072), cardiovascular disease (MESH:D002318), QT interval prolongation (MESH:D008133), metabolic dysfunction (MESH:D008659), arrhythmias (MESH:D001145), hemolytic uremia (MESH:D014511), ECM dysfunction (MESH:C535509), FL (MESH:C000722495), degenerative disease (MESH:D019636), cancer (MESH:D009369), leukemia (MESH:D007938), muscle atrophy (MESH:D009133)
- **Chemicals:** chloroform (MESH:D002725), EtOH (MESH:D000431), acepromazine (MESH:D000075), epoxy (MESH:D004853), CO2 (MESH:D002245), xylazine (MESH:D014991), stainless steel (MESH:D013193), water (MESH:D014867), nitrogen (MESH:D009584), FL (-), purines (MESH:D011687), pancreatic (MESH:D010187)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

5 references — full list in the complete paper: https://tomesphere.com/paper/PMC12876965/full.md

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Source: https://tomesphere.com/paper/PMC12876965