# Trim15 stabilizes VDAC3 via ubiquitination to suppress autophagy and enhance chemosensitivity in hypopharyngeal squamous cell carcinoma

**Authors:** Guangyi Wang, Yibang Shen, Lin Wang, Tao Fu, Yichuan Huang, Fangyu Chai, Mingjin Xu, Yan Jiang, Jisheng Zhang

PMC · DOI: 10.1038/s41420-026-02943-0 · Cell Death Discovery · 2026-01-30

## TL;DR

This study shows that Trim15 and VDAC3 regulate autophagy and chemoresistance in hypopharyngeal cancer, offering a new target for treatment.

## Contribution

The study identifies a novel regulatory axis involving Trim15 and VDAC3 in controlling autophagy and chemosensitivity in HPSCC.

## Key findings

- Trim15 is downregulated in HPSCC and inhibits cancer cell proliferation and migration.
- Trim15 stabilizes VDAC3 via ubiquitination, suppressing autophagy and mitophagy.
- Chloroquine enhances 5-fluorouracil sensitivity in HPSCC, with synergistic effects in xenograft models.

## Abstract

Hypopharyngeal squamous cell carcinoma (HPSCC) is a highly aggressive malignancy with a poor prognosis. This study elucidates the role of the E3 ubiquitin ligase Tripartite Motif Containing 15 (Trim15) and its substrate, mitochondrial voltage-dependent anion channel 3 (VDAC3), in regulating autophagy, mitophagy, and chemoresistance in HPSCC. We found that Trim15 is significantly downregulated in HPSCC tissues and inhibits cell proliferation and migration in FaDu and Detroit 562 cells. Trim15 stabilizes VDAC3 via K6-linked ubiquitination, thereby suppressing autophagy and mitophagy while elevating reactive oxygen species (ROS) levels. VDAC3 knockdown enhances autophagy and mitophagy, concomitantly reducing ROS and promoting cancer cell survival. High-concentration ethanol suppresses Trim15 and VDAC3 expression, suggesting an adaptive response to oxidative stress. Notably, chloroquine (CQ), an autophagy inhibitor, enhances HPSCC sensitivity to 5-fluorouracil (5-FU), with synergistic effects observed in xenograft models. These findings establish the Trim15-VDAC3-mitophagy axis as a critical regulator of HPSCC progression and chemoresistance, offering a novel therapeutic target for augmenting the efficacy of autophagy inhibitors in combination with standard chemotherapy.

## Linked entities

- **Genes:** TRIM15 (tripartite motif containing 15) [NCBI Gene 89870], VDAC3 (voltage dependent anion channel 3) [NCBI Gene 7419]
- **Chemicals:** 5-fluorouracil (PubChem CID 3385), chloroquine (PubChem CID 2719), ethanol (PubChem CID 702)
- **Diseases:** hypopharyngeal squamous cell carcinoma (MONDO:0044638)

## Full-text entities

- **Genes:** TRIM17 (tripartite motif containing 17) [NCBI Gene 51127] {aka RBCC, RNF16, terf}, TRIM21 (tripartite motif containing 21) [NCBI Gene 6737] {aka RNF81, RO52, Ro/SSA, SSA, SSA1, TRIM21/Ro52}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, Vdac3 (voltage-dependent anion channel 3) [NCBI Gene 22335], RBM38 (RNA binding motif protein 38) [NCBI Gene 55544] {aka HSRNASEB, RNPC1, SEB4B, SEB4D, dJ800J21.2}, Trim15 (tripartite motif-containing 15) [NCBI Gene 69097] {aka 1810012B10Rik}, TRIM15 (tripartite motif containing 15) [NCBI Gene 89870] {aka RNF93, ZNF178, ZNFB7}, KRT10 (keratin 10) [NCBI Gene 3858] {aka BCIE, BIE, CK10, EHK, EHK2, EHK2A}, COX8A (cytochrome c oxidase subunit 8A) [NCBI Gene 1351] {aka COX, COX8, COX8-2, COX8L, MC4DN15, VIII}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2) [NCBI Gene 10644] {aka IMP-2, IMP2, VICKZ2}, TRIM31 (tripartite motif containing 31) [NCBI Gene 11074] {aka C6orf13, HCG1, HCGI, RNF}, BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, VDAC3 (voltage dependent anion channel 3) [NCBI Gene 7419] {aka HD-VDAC3, VDAC-3}, TRIM11 (tripartite motif containing 11) [NCBI Gene 81559] {aka BIA1, RNF92}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, ABCC9 (ATP binding cassette subfamily C member 9) [NCBI Gene 10060] {aka ABC37, ATFB12, CANTU, CMD1O, IDMYS, SUR2}, PINK1 (PTEN induced kinase 1) [NCBI Gene 65018] {aka BRPK, PARK6}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, TRIM4 (tripartite motif containing 4) [NCBI Gene 89122] {aka RNF87}, VDAC1 (voltage dependent anion channel 1) [NCBI Gene 7416] {aka PORIN, VDAC-1}, MFN2 (mitofusin 2) [NCBI Gene 9927] {aka CMT2A, CMT2A2, CMT2A2A, CMT2A2B, CPRP1, HMSN6A}, TRIM65 (tripartite motif containing 65) [NCBI Gene 201292] {aka 4732463G12Rik}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, APOA1 (apolipoprotein A1) [NCBI Gene 335] {aka AMYLD3, HPALP2, apo(a)}, VDAC2 (voltage dependent anion channel 2) [NCBI Gene 7417], NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, USP8 (ubiquitin specific peptidase 8) [NCBI Gene 9101] {aka HumORF8, PITA4, SPG59, UBPY}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817] {aka INrf2, KLHL19}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, MAP1LC3B (microtubule associated protein 1 light chain 3 beta) [NCBI Gene 81631] {aka ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}
- **Diseases:** tumorigenesis (MESH:D063646), breast cancer (MESH:D001943), nasopharyngeal carcinoma (MESH:D000077274), pancreatic ductal adenocarcinoma (MESH:D021441), colon cancer (MESH:D015179), metastasis (MESH:D009362), head and neck malignancy (MESH:D006258), cytotoxicity (MESH:D064420), gastric adenocarcinoma (MESH:D013274), cancer (MESH:D009369), lung cancer (MESH:D008175), hypoxic (MESH:D002534), pharyngeal squamous cell carcinoma (MESH:D002294), non-small cell lung and pancreatic cancers (MESH:D002289), HPSCC (MESH:D000077195), Mitochondrial dysfunction (MESH:D028361), hypopharyngeal cancer (MESH:D007012), pancreatic tumors (MESH:D010190)
- **Chemicals:** Alcohol (MESH:D000438), CHX (MESH:D003513), 5-FU (MESH:D005472), CO2 (MESH:D002245), epoxy (MESH:D004853), PBS (MESH:D007854), crystal violet (MESH:D005840), cisplatin (MESH:D002945), PVDF (MESH:C024865), uranyl acetate (MESH:C005460), ROS (MESH:D017382), phosphate (MESH:D010710), DCFH-DA (MESH:C029569), paraformaldehyde (MESH:C003043), osmium tetroxide (MESH:D009993), tamoxifen (MESH:D013629), Etoh (MESH:D000431), puromycin (MESH:D011691), DMEM (-), N-ethylmaleimide (MESH:D005033), TRIzol (MESH:C411644), CQ (MESH:D002738), Mito-tempo (MESH:C555916), MG132 (MESH:C072553), GSH (MESH:D005978), lipid (MESH:D008055), SDS (MESH:D012967)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Mutations:** S4E, 4  C
- **Cell lines:** 562 — Homo sapiens (Human), Finite cell line (CVCL_X233), pLKO.1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), FaDu — Homo sapiens (Human), Hypopharyngeal squamous cell carcinoma, Cancer cell line (CVCL_1218), HPSCC — Homo sapiens (Human), Hypopharyngeal squamous cell carcinoma, Cancer cell line (CVCL_0D71), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), Detroit 562 — Homo sapiens (Human), Pharyngeal squamous cell carcinoma, Cancer cell line (CVCL_1171), 293 T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12876940/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12876940/full.md

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Source: https://tomesphere.com/paper/PMC12876940