# The R451 site is critical for PTPN18 to exert tumor suppressive effects in breast cancer through the negative regulatory interacting protein fibrillarin

**Authors:** Na Zhang, Tao Wang, Bin Bai, Xiaonan Zhang, Wenying Xu, Weilu Chen, Yang Yu, Bing Wang

PMC · DOI: 10.1038/s41419-025-08395-1 · Cell Death & Disease · 2026-01-20

## TL;DR

This study shows that the R451 site of PTPN18 is crucial for its tumor-suppressing role in breast cancer by interacting with fibrillarin.

## Contribution

The study identifies a novel interaction between PTPN18 and fibrillarin, revealing a new tumor suppression mechanism in breast cancer.

## Key findings

- PTPN18 interacts with fibrillarin via R451 and V187 sites, promoting fibrillarin degradation.
- PTPN18 negatively regulates fibrillarin to affect RNA synthesis and signaling pathways.
- PTPN18-fibrillarin interaction inhibits breast cancer cell proliferation and tumor growth.

## Abstract

PTPN18 is a member of the PEST (proline-glutamic acid-serine-threonine rich sequence) protein tyrosine phosphatase subfamily that has been intensively studied in immune cells. Here, we identified a novel PTPN18-interacting protein, fibrillarin (FBL), through mass spectrometry analysis and clarified the binding sites and interaction motifs via peptide mapping. The R451 site of PTPN18 and the V187 site of FBL dominate the interaction between PTPN18 and FBL. Further studies suggest that PTPN18, but not PTPN18 R451A, can dephosphorylate the Y313 site of FBL and can reduce the protein expression level of FBL by promoting its ubiquitin proteasome degradation. In addition, PTPN18 can affect its downstream functions, including the MAPK signaling pathway and methylation of rRNA 2′-O and histone H2AQ104 sites, as well as RNA synthesis through negative regulation of FBL, whereas PTPN18 R451A cannot. As a result, the interaction between PTPN18 and FBL affects the proliferation and apoptosis of breast cancer cells, thus inhibiting tumor growth. This study reveals a novel mechanism through which PTPN18 inhibits breast cancer progression and further refines the PTPN18 protein interaction network, which is important for understanding its role in cell signaling, revealing disease mechanisms, discovering new drug targets, and developing new treatments.

## Linked entities

- **Genes:** PTPN18 (protein tyrosine phosphatase non-receptor type 18) [NCBI Gene 26469], FBL (fibrillarin rRNA 2'-O-methyltransferase) [NCBI Gene 2091]
- **Proteins:** PTPN18 (protein tyrosine phosphatase non-receptor type 18), Fib (Fibrillarin), FBL (fibrillarin rRNA 2'-O-methyltransferase)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** Pstpip2 (proline-serine-threonine phosphatase-interacting protein 2) [NCBI Gene 19201] {aka MAYP, cmo}, TNPO1 (transportin 1) [NCBI Gene 3842] {aka IPO2, KPNB2, MIP, MIP1, TRN}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, PTPN18 (protein tyrosine phosphatase non-receptor type 18) [NCBI Gene 26469] {aka BDP1, PTP-HSCF}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, Ptpn18 (protein tyrosine phosphatase, non-receptor type 18) [NCBI Gene 19253] {aka FLP-1, FLP1, HSCF, PTP-HSCF, PTP-K1, Ptpk1}, CS (citrate synthase) [NCBI Gene 1431], CSK (C-terminal Src kinase) [NCBI Gene 1445], Fbl (fibrillarin) [NCBI Gene 14113] {aka FIB, FLRN, RNU3IP1}, MVP (major vault protein) [NCBI Gene 9961] {aka LRP, VAULT1}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, MAPK9 (mitogen-activated protein kinase 9) [NCBI Gene 5601] {aka JNK-55, JNK2, JNK2A, JNK2ALPHA, JNK2B, JNK2BETA}, FBL (fibrillarin rRNA 2'-O-methyltransferase) [NCBI Gene 2091] {aka FIB, FLRN, Nop1, RNU3IP1}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, ETS1 (ETS proto-oncogene 1, transcription factor) [NCBI Gene 2113] {aka ETS-1, EWSR2, c-ets-1, p54}, H2AC18 (H2A clustered histone 18) [NCBI Gene 8337] {aka H2A, H2A.2, H2A/O, H2A/q, H2AFO, H2a-615}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}
- **Diseases:** tumorigenesis (MESH:D063646), Breast Cancer (MESH:D001943), colorectal and endometrial cancer (MESH:D016889), tumor suppressor (OMIM:601308), ectopic (MESH:C566852), Tumor (MESH:D009369), breast carcinogenesis (MESH:D061325), metastasis (MESH:D009362)
- **Chemicals:** DAPI (MESH:C007293), CCK8 (MESH:D012844), S (MESH:D013455), uridine (MESH:D014529), water (MESH:D014867), CHX (MESH:D003513), Coomassie blue (MESH:C048139), agarose (MESH:D012685), FITC (MESH:D016650), PI (MESH:D010716), tyrosine (MESH:D014443), PVDF (MESH:C024865), P (MESH:D010758), Triton X-100 (MESH:D017830), PBS (MESH:D007854), MG132 (MESH:C072553), 5-ethynyl-uridine (-), paraformaldehyde (MESH:C003043), TRIzol (MESH:C411644), Tween (MESH:D011136), CO2 (MESH:D002245), Alexa Fluor 488 (MESH:C000711379), penicillin (MESH:D010406), paraffin (MESH:D010232), streptomycin (MESH:D013307), polyacrylamide (MESH:C016679), CS (MESH:D002586), SDS (MESH:D012967), crystal violet (MESH:D005840), Hoechst 33342 (MESH:C017807)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** Y313, Ser/Thr, R451A, V187, C229S, Y313F, R451A, R451, R451
- **Cell lines:** MCF7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), MCF — Homo sapiens (Human), Transformed cell line (CVCL_E778), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), c — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_9103), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), CCK8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC12876892