# ENY2 transcription and export complex 2 subunit deficiency induces nucleolar stress to inhibit tumor progression through NPM1/MDM2/p53-dependent and -independent responses

**Authors:** Shiqi Zuo, Siyuan He, Zhiqin Zhu, Yanjie Hou, Ziqing Wu, Yao Tang, Yujiao Zou

PMC · DOI: 10.1007/s13402-025-01148-4 · Cellular Oncology (Dordrecht, Netherlands) · 2026-02-05

## TL;DR

This study shows how ENY2 influences tumor growth by causing nucleolar stress through both p53-dependent and p53-independent pathways.

## Contribution

The study reveals a novel p53-independent RISC-IL11 nucleolar stress pathway and clarifies ENY2's role in tumor progression.

## Key findings

- ENY2 overexpression promotes tumor growth and cell cycle progression in vitro and in vivo.
- ENY2 depletion induces nucleolar stress by impairing ribosomal subunit export and stabilizing p53.
- In p53-mutant cells, ENY2 knockdown enhances RISC activity to suppress tumor proliferation.

## Abstract

The selective induction of nucleolar stress in cancer cells has become a potential anticancer therapy. However, precisely regulating the key molecules involved in nucleolar stress remains a challenging topic in current research. ENY2 transcription and export complex 2 subunit (ENY2) is a transcription-associated nuclear protein that is upregulated in several cancers. However, its specific function and mechanistic role in oncogenesis remain poorly characterized and require further exploration.

ENY2 was identified by screening ChIP-seq and public databases. Its role in tumor development was confirmed through in vivo and in vitro experiments. RNA sequencing, polysome profiling, agarose gel electrophoresis, and immunofluorescence suggested ENY2’s involvement in ribosome biogenesis. Interacting proteins were identified by confocal microscopy, co-IP, and molecular docking, then validated by western blotting and ubiquitination assays. Finally, drug resistance experiments evaluated ENY2’s clinical potential.

We discovered that the overexpression of ENY2 significantly enhances tumor growth and cell cycle progression both in vitro and in vivo. Conversely, depletion of ENY2 facilitating the release of NPM1 into the nucleoplasm, thereby impeding ribosomal subunit export and inducing nucleolar stress. Additionally, the released NPM1 interacts with MDM2 within the nucleus to stabilize p53 protein levels, consequently inhibiting tumor growth. Notably, knockdown of ENY2 in p53-mutant cancer cell lines exhibits an augmented binding affinity and silencing efficacy of RISC towards target mRNA molecules, ultimately suppressing tumor proliferation through a p53-independent manner.

This study elucidated a previously unrecognized role of ENY2 in tumor growth, clarified the NPM1/MDM2/ p53-dependent mechanism of ENY2-mediated tumor cell growth suppression. We also provided a novel p53-independent RISC-IL11 nucleolar stress response pathway, which may provide a new target for the treatment of breast cancer.

ENY2 promoting tumor initiation and progression by inducing p53-dependent and independent nucleolar stress responses

ENY2 promoting tumor initiation and progression by inducing p53-dependent and independent nucleolar stress responses

The online version contains supplementary material available at 10.1007/s13402-025-01148-4.

## Linked entities

- **Genes:** ENY2 (ENY2 transcription and export complex 2 subunit) [NCBI Gene 56943], NPM1 (nucleophosmin 1) [NCBI Gene 4869], MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193], TP53 (tumor protein p53) [NCBI Gene 7157], SCPEP1 (serine carboxypeptidase 1) [NCBI Gene 59342], IL11 (interleukin 11) [NCBI Gene 3589]
- **Proteins:** ENY2 (ENY2 transcription and export complex 2 subunit), NPM1 (nucleophosmin 1), MDM2 (MDM2 proto-oncogene), TP53 (tumor protein p53), SCPEP1 (serine carboxypeptidase 1)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** BTG2 (BTG anti-proliferation factor 2) [NCBI Gene 7832] {aka APRO1, PC3, TIS21}, RPL5 (ribosomal protein L5) [NCBI Gene 6125] {aka L5, MSTP030, PPP1R135, uL18}, RNASE1 (ribonuclease A family member 1, pancreatic) [NCBI Gene 6035] {aka RAC1, RIB1, RNS1}, KAT2A (lysine acetyltransferase 2A) [NCBI Gene 2648] {aka GCN5, GCN5L2, PCAF-b, hGCN5}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, BBC3 (BCL2 binding component 3) [NCBI Gene 27113] {aka JFY-1, JFY1, PUMA}, RPL11 (ribosomal protein L11) [NCBI Gene 6135] {aka DBA7, GIG34, L11, uL5}, H2BC21 (H2B clustered histone 21) [NCBI Gene 8349] {aka GL105, H2B, H2B-GL105, H2B.1, H2BE, H2BFQ}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, BOP1 (BOP1 ribosomal biogenesis factor) [NCBI Gene 23246], RRN3 (RNA polymerase I transcription factor RRN3) [NCBI Gene 54700] {aka A-270G1.2, TIFIA}, RPL18 (ribosomal protein L18) [NCBI Gene 6141] {aka DBA18, L18, eL18}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, AGXT (alanine--glyoxylate aminotransferase) [NCBI Gene 189] {aka AGT, AGT1, AGXT1, PH1, SPAT, SPT}, ENY2 (ENY2 transcription and export complex 2 subunit) [NCBI Gene 56943] {aka DC6, Sus1, e(y)2}, ADA (adenosine deaminase) [NCBI Gene 100] {aka ADA1}, PRMT1 (protein arginine methyltransferase 1) [NCBI Gene 3276] {aka ANM1, HCP1, HRMT1L2, IR1B4}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, RPS7 (ribosomal protein S7) [NCBI Gene 6201] {aka DBA8, S7, eS7}, FBL (fibrillarin rRNA 2'-O-methyltransferase) [NCBI Gene 2091] {aka FIB, FLRN, Nop1, RNU3IP1}, POLR1A (RNA polymerase I subunit A) [NCBI Gene 25885] {aka A190, AFDCIN, HLD27, RPA1, RPA190, RPA194}, SCPEP1 (serine carboxypeptidase 1) [NCBI Gene 59342] {aka HSCP1, RISC}, POLI (DNA polymerase iota) [NCBI Gene 11201] {aka RAD30B, RAD3OB, eta2}, AGO2 (argonaute RISC catalytic component 2) [NCBI Gene 27161] {aka CASC7, EIF2C2, LESKRES, LINC00980, PPD, Q10}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}, SNORD14E (small nucleolar RNA, C/D box 14E) [NCBI Gene 85391], IL11 (interleukin 11) [NCBI Gene 3589] {aka AGIF, IL-11}, NPM1 (nucleophosmin 1) [NCBI Gene 4869] {aka B23, NPM}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}
- **Diseases:** hypoxia (MESH:D000860), lung metastasis (MESH:D009362), node (MESH:D012804), TNBC (MESH:D064726), tumorigenesis (MESH:D063646), Breast and colon cancer (MESH:D001943), ENY2 deficiency (MESH:D007153), colon cancer (MESH:D015179), Defects in ribosome biogenesis (MESH:C536664), lymph node metastasis (MESH:D008207), Cancer (MESH:D009369)
- **Chemicals:** O- (MESH:D010100), cisplatin (MESH:D002945), CCK- (MESH:D002766), sucrose (MESH:D013395), H&amp;E (MESH:D006371), PVDF (MESH:C024865), TritonX-100 (MESH:D017830), aspirin (MESH:D001241), penicillin (MESH:D010406), streptomycin (MESH:D013307), ethanol (MESH:D000431), EDTA (MESH:D004492), CCK-8 (MESH:D012844), hydrogen (MESH:D006859), H2O2 (MESH:D006861), water (MESH:D014867), 5-fluorouracil (MESH:D005472), CHX (MESH:D003513), ruxolitinib (MESH:C540383), Lipofectamine (MESH:C086724), PBS (MESH:D007854), DAB (MESH:C000469), CO2 (MESH:D002245), paraffin (MESH:D010232), polyacrylamide (MESH:C016679), hematoxylin (MESH:D006416), crystal violet (MESH:D005840), DAPI (MESH:C007293), balsam (MESH:D001453), Agarose (MESH:D012685), PI (MESH:D010716), MG132 (MESH:C072553), Act.D (MESH:D003609), TRIzol (MESH:C411644), SDS (MESH:D012967), oxaliplatin (MESH:D000077150), puromycin (MESH:D011691), xylene (MESH:D014992), paclitaxel (MESH:D017239), glycine (MESH:D005998), P (MESH:D010758), 5O (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Caenorhabditis elegans (species) [taxon 6239], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Drosophila melanogaster (fruit fly, species) [taxon 7227], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** R280K, R249S
- **Cell lines:** MCF-10 A — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0598), RKO — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0504), T47D — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0553), BT-549 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_1092), SKBR3 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0033), I-J — Canis lupus familiaris (Dog), Embryonic stem cell (CVCL_JL38), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), HCC-1937 — Homo sapiens (Human), Breast ductal carcinoma, Cancer cell line (CVCL_0290), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), SW480 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0546), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12876109/full.md

## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC12876109/full.md

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Source: https://tomesphere.com/paper/PMC12876109