# SIRT7 as a context-dependent biomarker and therapeutic target: Insights from a pan-cancer study

**Authors:** K.M. Tanjida Islam, Shahin Mahmud, Firoz Ahmed, Firoz Ahmed, Firoz Ahmed, Firoz Ahmed

PMC · DOI: 10.1371/journal.pone.0342269 · PLOS One · 2026-02-05

## TL;DR

This study explores SIRT7's role in various cancers, showing it can act as both a tumor promoter and suppressor, and identifies potential inhibitors for targeted therapy.

## Contribution

The study provides the first pan-cancer analysis of SIRT7, revealing its context-dependent role and identifying novel inhibitors.

## Key findings

- SIRT7 is a central hub linking NAD+ metabolism with transcriptional regulation (R2: 0.9839).
- High SIRT7 expression correlates with poor survival in six cancers but better outcomes in sarcoma.
- Two promising SIRT7 inhibitors were identified with superior binding properties.

## Abstract

SIRT7 is a member of the sirtuin family and has emerged as a crucial player in cancer biology, with a multifaceted role in both tumor-promoting and tumor-suppressing activities. Despite its importance in connecting NAD+ metabolism with transcriptional regulation, a systematic analysis across multiple cancer types remains underexplored, thereby limiting our understanding of its prognostic value, mutational impact, immune associations, and therapeutic potential. Therefore, this study aims to evaluate the pan-cancer significance of SIRT7 through integrated computational approaches. We employed protein structure modeling, deep neural network-guided protein interaction analysis, cancer hallmark association, gene expression profiling, survival analysis, mutational landscape, immune infiltration assessment, and structure-based drug discovery, combining molecular docking and dynamics simulations. Our deep neural network analyses revealed SIRT7 as a central hub connecting NAD+ metabolism with transcriptional regulation in its sub-network (R2: 0.9839). SIRT7 exhibited differential expression across 17 cancer types, with high expression associated with poor survival in six cancer types; however, it surprisingly correlated with better outcomes in sarcoma. Cancer-specific mutations significantly reduced patient survival and altered the expression of network components. We identified regulatory mechanisms involving five miRNAs and three transcription factors. Therapeutic intervention identified two promising SIRT7 inhibitors (ZINC000150487575 and ZINC000150641215) with superior binding properties compared to the reference inhibitor. This comprehensive pan-cancer analysis of SIRT7 provides a framework for understanding its role in cancer biology and identifies potential therapeutic opportunities for personalized interventions. Our findings have immediate implications for clinical oncology, enabling SIRT7 as a biomarker for patient stratification and a therapeutic target for novel inhibitor development. Targeting SIRT7 may offer new therapeutic strategies for various cancers, particularly those with high SIRT7 expression, as SIRT7 functions in a context-dependent manner in cancer regulation. Further studies are necessary to validate the efficacy of SIRT7 inhibitors and explore their role in therapeutic resistance and disease recurrence.

## Linked entities

- **Genes:** SIRT7 (sirtuin 7) [NCBI Gene 51547]

## Full-text entities

- **Genes:** TFAP2A (transcription factor AP-2 alpha) [NCBI Gene 7020] {aka AP-2, AP-2alpha, AP2TF, BOFS, TFAP2}, ELK4 (ETS transcription factor ELK4) [NCBI Gene 2005] {aka SAP1}, NRF1 (nuclear respiratory factor 1) [NCBI Gene 4899] {aka ALPHA-PAL}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, SIRT7 (sirtuin 7) [NCBI Gene 51547] {aka SIR2L7}, ENPP1 (ectonucleotide pyrophosphatase/phosphodiesterase 1) [NCBI Gene 5167] {aka ARHR2, COLED, M6S1, NPP1, NPPS, PC-1}, SIRT1 (sirtuin 1) [NCBI Gene 23411] {aka SIR2, SIR2L1, SIR2alpha}, SRF (serum response factor) [NCBI Gene 6722] {aka MCM1}, NAMPT (nicotinamide phosphoribosyltransferase) [NCBI Gene 10135] {aka 1110035O14Rik, PBEF, PBEF1, VF, VISFATIN}, NADSYN1 (NAD synthetase 1) [NCBI Gene 55191] {aka VCRL3}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, NNMT (nicotinamide N-methyltransferase) [NCBI Gene 4837], PNP (purine nucleoside phosphorylase) [NCBI Gene 4860] {aka NP, PRO1837, PUNP}, BST1 (bone marrow stromal cell antigen 1) [NCBI Gene 683] {aka CD157, cADPR2}, NADK2 (NAD kinase 2, mitochondrial) [NCBI Gene 133686] {aka C5orf33, DECRD, MNADK, NADKD1}, POLI (DNA polymerase iota) [NCBI Gene 11201] {aka RAD30B, RAD3OB, eta2}, FOXC1 (forkhead box C1) [NCBI Gene 2296] {aka ARA, ASGD3, FKHL7, FREAC-3, FREAC3, IGDA}, NSD1 (nuclear receptor binding SET domain protein 1) [NCBI Gene 64324] {aka ARA267, KMT3B, SOTOS, SOTOS1, STO}, NMNAT2 (nicotinamide nucleotide adenylyltransferase 2) [NCBI Gene 23057] {aka C1orf15, PNAT2}, MIR335 (microRNA 335) [NCBI Gene 442904] {aka MIRN335, hsa-mir-335, miRNA335, mir-335}, SIRT6 (sirtuin 6) [NCBI Gene 51548] {aka SIR2L6, hSIRT6}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, MIR34A (microRNA 34a) [NCBI Gene 407040] {aka MIRN34A, miRNA34A, mir-34, mir-34a}, ENPP3 (ectonucleotide pyrophosphatase/phosphodiesterase 3) [NCBI Gene 5169] {aka B10, CD203c, NPP3, PD-IBETA, PDNP3}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein) [NCBI Gene 9136] {aka RNU3IP2, U3-55K}, UBTF (upstream binding transcription factor) [NCBI Gene 7343] {aka CONDBA, NOR-90, UBF, UBF-1, UBF1, UBF2}, CAPN1 (calpain 1) [NCBI Gene 823] {aka CANP, CANP1, CANPL1, SPG76, muCANP, muCL}, NMNAT1 (nicotinamide nucleotide adenylyltransferase 1) [NCBI Gene 64802] {aka LCA9, NMNAT, PNAT1, SHILCA}, NUDT12 (nudix hydrolase 12) [NCBI Gene 83594]
- **Diseases:** CHOL (MESH:D018281), lung metastasis (MESH:D009362), cardiovascular diseases (MESH:D002318), death (MESH:D003643), gallbladder cancer (MESH:D005706), anaplastic thyroid cancer (MESH:D065646), ESCA (MESH:D004938), Colorectal cancer (MESH:D015179), KIRC (MESH:D002292), ADMET (MESH:C562790), UVM (MESH:C536494), LUAD (MESH:D000077192), UCEC (MESH:D016889), KICH (MESH:D007674), tumorigenesis (MESH:D063646), Breast Invasive Carcinoma (MESH:D001943), metabolic (MESH:D008659), inflammation (MESH:D007249), COAD (MESH:D003110), osteosarcoma (MESH:D012516), Glioma (MESH:D005910), THCA (MESH:D013964), sarcoma (MESH:D012509), carcinogenic (MESH:D011230), HNSC (MESH:D000077195), Cervical Squamous Cell Carcinoma and (MESH:D002294), renal cancer (MESH:D007680), non-small cell lung cancer (MESH:D002289), GBM (MESH:D005909), Melanoma (MESH:D008545), Lung Cancer (MESH:D008175), respiratory disorders (MESH:D012131), Cancer (MESH:D009369), HCC (MESH:D006528), Toxicity (MESH:D064420), Gastric Cancer (MESH:D013274), BLCA (MESH:D001749), head and neck cancer (MESH:D006258), Endocervical Adenocarcinoma (MESH:D000230)
- **Chemicals:** Copper Sulfate (MESH:D019327), Quercetin (MESH:D011794), nicotinate (MESH:D009525), Cyclosporine (MESH:D016572), Curcumin (MESH:D003474), NAD (MESH:D009243), Acetaminophen (MESH:D000082), water (MESH:D014867), NaCl (MESH:D012965), Hydrogen (MESH:D006859), alkaloids (MESH:D000470), Tunicamycin (MESH:D014415), Valproic Acid (MESH:D014635), lipid (MESH:D008055), amino acids (MESH:D000596), nicotinamide (MESH:D009536), Cobaltous Chloride (MESH:C018021), tryptophan (MESH:D014364), glucose (MESH:D005947), ICG 001 (MESH:C492448), Tetrachlorodibenzodioxin (MESH:D000072317), AlphaFold (-), ZINC (MESH:D015032), Atrazine (MESH:D001280), Cupric Chloride (MESH:C029892), carotenoids (MESH:D002338)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** G268V, R289W, P368A, P13K, H226Y, G375S, D234Y, G246R, T341I, A114V, K72N, K395N, GLN167
- **Cell lines:** BLCA — Homo sapiens (Human), Bladder carcinoma, Cancer cell line (CVCL_2743)

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12875470/full.md

## References

100 references — full list in the complete paper: https://tomesphere.com/paper/PMC12875470/full.md

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Source: https://tomesphere.com/paper/PMC12875470