# Dissecting the development of bovine testicular tissue using spatial transcriptomics

**Authors:** Haoyan Jin, Yuan Ma, Yaru Xie, Shunkai Yang, Xiaoxu Chen, Nana Wang, Lingkai Zhang, Yun Ma

PMC · DOI: 10.1186/s40104-025-01340-4 · 2026-02-05

## TL;DR

This study maps gene activity in bull testicles using a new sequencing method to understand how male germ cells develop.

## Contribution

The first spatial transcription map of bovine testicular tissue is created, revealing dynamic gene activity during spermatogenesis.

## Key findings

- Four germ cell groups and five somatic cell groups were identified with distinct biological functions.
- Cell subpopulations and marker genes were defined, along with germ cell communication patterns.
- The study provides insights into transcriptional dynamics during spermatogenesis in large mammals.

## Abstract

Mammalian spermatogenesis is critical for the transmission of male genetic information, and single-cell sequencing technology can reveal its complex process. However, at present, there is no research on the dynamic transcription of bovine germ cell population.

In this study, we used Stereo-seq to construct a spatial transcription map of bovine testicular tissue at two ages. Four germ cell groups and five somatic cell groups were determined, and functional enrichment characterized their different biological functions and the differences between calves and adult bulls. At the same time, we also defined the subpopulations of cells and marker genes, then, clarified the communications between germ cells.

Our study constructed a spatial transcription map of bovine testicular tissue for the first time, and systematically described the dynamic transcription changes during spermatogenesis. These data laid the foundation for the study of spermatogenesis in large mammals and elucidated the transcriptional dynamics underlying male germ cell development.

The online version contains supplementary material available at 10.1186/s40104-025-01340-4.

## Full-text entities

- **Genes:** SYCP3 (synaptonemal complex protein 3) [NCBI Gene 615896], KDM5B (lysine demethylase 5B) [NCBI Gene 540633] {aka JARID1B}, PRSS55 (serine protease 55) [NCBI Gene 521059], PIWIL1 (piwi like RNA-mediated gene silencing 1) [NCBI Gene 537833], TNP1 (transition protein 1) [NCBI Gene 281537], TKT (transketolase) [NCBI Gene 445425], ACTA2 (actin alpha 2, smooth muscle) [NCBI Gene 515610], SOX9 (SRY-box transcription factor 9) [NCBI Gene 100336535], FGFR1 (fibroblast growth factor receptor 1) [NCBI Gene 281768], Tnp1 (transition protein 1) [NCBI Gene 21958] {aka Stp-1, TP1, Tp-1}, Dmrt1 (doublesex and mab-3 related transcription factor 1) [NCBI Gene 50796], CSTL1 (cystatin like 1) [NCBI Gene 523331], Akap4 (A kinase anchor protein 4) [NCBI Gene 11643] {aka AKAP-4, AKAP82, Fsc1, PRKA4, mAKAP82, p82}, DMRT1 (doublesex and mab-3 related transcription factor 1) [NCBI Gene 616245], RFX2 (regulatory factor X2) [NCBI Gene 534475], UCHL1 (ubiquitin C-terminal hydrolase L1) [NCBI Gene 514394], Fgf7 (fibroblast growth factor 7) [NCBI Gene 14178] {aka Fgf5b, Kgf}, SLTM (SAFB like transcription modulator) [NCBI Gene 515193], Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, TKTL1 (transketolase like 1) [NCBI Gene 507517], Fgfr2 (fibroblast growth factor receptor 2) [NCBI Gene 14183] {aka Bek, Fgfr-2, Fgfr-7, Fgfr2b, Fgfr7, KGFR}, ERBB4 (erb-b2 receptor tyrosine kinase 4) [NCBI Gene 522419], CCNA1 (cyclin A1) [NCBI Gene 521939], Kdm5b (lysine demethylase 5B) [NCBI Gene 75605] {aka 2010009J12Rik, 2210016I17Rik, D1Ertd202e, Jarid1b, PLU-1, PUT1}, Sltm (SAFB-like, transcription modulator) [NCBI Gene 66660] {aka 5730455C01Rik, 5730555F13Rik, 9130215G10Rik, Met}, Crem (cAMP responsive element modulator) [NCBI Gene 12916] {aka ICER, ICERI}, DAZL (deleted in azoospermia like) [NCBI Gene 530116], Fgfr1 (fibroblast growth factor receptor 1) [NCBI Gene 14182] {aka Eask, FGFR-I, FLG, Fgfr-1, Flt-2, Fr1}, AKAP4 (A-kinase anchoring protein 4) [NCBI Gene 281611], PRM1 (protamine 1) [NCBI Gene 281423], FGFR2 (fibroblast growth factor receptor 2) [NCBI Gene 404193] {aka FGFR}, ACTG2 (actin gamma 2, smooth muscle) [NCBI Gene 281595], CST8 (cystatin 8) [NCBI Gene 617395], Ar (androgen receptor) [NCBI Gene 11835] {aka Tfm}, Tktl1 (transketolase-like 1) [NCBI Gene 83553], HSPA8 (heat shock protein family A (Hsp70) member 8) [NCBI Gene 281831] {aka HSPA10, Hsc70}, Sos1 (SOS Ras/Rac guanine nucleotide exchange factor 1) [NCBI Gene 20662] {aka 4430401P03Rik, 9630010N06}, H1f6 (H1.6 linker histone, cluster member) [NCBI Gene 107970] {aka H1-6, H1.6, H1ft, H1t, Hist1h1t}, PDGFRA (platelet derived growth factor receptor alpha) [NCBI Gene 282301], Fgf2 (fibroblast growth factor 2) [NCBI Gene 14173] {aka Fgf-2, Fgf2a, Fgfb, bFGF}, YBX2 (Y-box binding protein 2) [NCBI Gene 614429], SYCP1 (synaptonemal complex protein 1) [NCBI Gene 525413], PRM2 (protamine 2) [NCBI Gene 281424], CLGN (calmegin) [NCBI Gene 504256], TMEM190 (transmembrane protein 190) [NCBI Gene 504932], Frs2 (fibroblast growth factor receptor substrate 2) [NCBI Gene 327826] {aka C330018A15Rik, FRS2-alpha, Frs2alpha, SNT-1, SNT1}, Etv5 (ets variant 5) [NCBI Gene 104156] {aka 1110005E01Rik, 8430401F14Rik, ERM}, MYH11 (myosin heavy chain 11) [NCBI Gene 530050], FGF1 (fibroblast growth factor 1) [NCBI Gene 281160] {aka ECGF, EDGF, EDGF II, FGF-1, FGF2B, HBGF-1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 517948] {aka PI3K, PI3Kbeta}, Uchl1 (ubiquitin carboxy-terminal hydrolase L1) [NCBI Gene 22223] {aka PGP 9.5, PGP9.5, UCH-L1, UCHL-1, gad}, Lyzl4 (lysozyme-like 4) [NCBI Gene 69032] {aka 1810009N24Rik, Lyc4, Lyza}, Fgf9 (fibroblast growth factor 9) [NCBI Gene 14180] {aka Eks, FGF-9, Fgf4b, GAF, HBGF-9}, Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, TEX29 (testis expressed 29) [NCBI Gene 617473] {aka C12H13orf16, C13orf16}, Ybx2 (Y box protein 2) [NCBI Gene 53422] {aka Msy2}, TNP2 (transition protein 2) [NCBI Gene 281538], Lyar (Ly1 antibody reactive clone) [NCBI Gene 17089] {aka MLZ-264}, CYP17A1 (cytochrome P450 family 17 subfamily A member 1) [NCBI Gene 281739] {aka CYP17, CYPXVII, P450-C17, P450c17}, FGF8 (fibroblast growth factor 8) [NCBI Gene 326284] {aka FGF6C}
- **Diseases:** MID (MESH:C567116), PMC (MESH:D002292), MS (MESH:D009103), CID (MESH:D001259), tumor (MESH:D009369), RS (MESH:D001480), ALC (MESH:D007984)
- **Chemicals:** PBS (MESH:D007854), Paraffin (MESH:D010232), Androstenedione (MESH:D000735), hematoxylin (MESH:D006416), RA (MESH:D014212), penicillin (MESH:D010406), ethanol (MESH:D000431), streptomycin (MESH:D013307), testosterone (MESH:D013739), EDTA (MESH:D004492), eosin (MESH:D004801), H&amp;E (MESH:D006371), MMC (-), xylene (MESH:D014992), methanol (MESH:D000432), sugar (MESH:D000073893), PNA (MESH:D020135)
- **Species:** Homo sapiens (human, species) [taxon 9606], Bos taurus (bovine, species) [taxon 9913], Sus scrofa (pig, species) [taxon 9823], Mus musculus (house mouse, species) [taxon 10090]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12874701/full.md

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Source: https://tomesphere.com/paper/PMC12874701