# Preparation, identification and molecular characterization of umami peptides from skipjack tuna meat: Insights from sensory evaluation and molecular dynamics simulations

**Authors:** Fang-Fang Huang, Zhe Zhang, Yang-Yan Jin, Yu-Hui Zeng, Qi Zeng, Chang-Feng Chi, Bin Wang

PMC · DOI: 10.1016/j.fochx.2026.103595 · 2026-01-26

## TL;DR

Researchers identified umami peptides from skipjack tuna that are more potent than monosodium glutamate and explained how they interact with taste receptors.

## Contribution

Novel umami peptides with lower taste thresholds than MSG and insights into their molecular interactions with taste receptors.

## Key findings

- Fourteen umami peptides were identified, with seven showing lower umami thresholds than monosodium glutamate.
- DFDNA and DVPAE formed stable complexes with the T1R1/T1R3 receptor during molecular dynamics simulations.
- Peptide-receptor binding was enhanced by acidic and aromatic residues, leading to strong hydrogen bonds and π interactions.

## Abstract

In this study, novel umami peptides were identified from skipjack tuna protein hydrolysates using enzymatic hydrolysis, purification, sensory evaluation, and molecular modeling. A hydrolysate with a high degree of hydrolysis was prepared using papain and flavor protease, and the most umami-active fraction was obtained through ultrafiltration and chromatographic separation. Fourteen peptides were identified, among which HAHA, QEYGGG, YD, DFDNA, DVPAE, EADH, and EYF showed lower umami thresholds than monosodium glutamate. Molecular docking and 100 ns molecular dynamics simulations revealed that DFDNA and DVPAE displayed low RMSD values, while key residues in the T1R1 and T1R3 subunits remained structurally stable. High-affinity peptides formed persistent hydrogen bonds and π interactions with the receptor complex. Short peptide length and the presence of acidic and aromatic residues were crucial for receptor recognition. Overall, these results clarify the molecular basis of umami perception and provide practical guidance for designing natural peptide-based flavor enhancers for applications.

•Key umami peptides were identified and evaluated for taste potency.•DFDNA, WYDY, and EYF showed strong umami activity with low taste thresholds.•DFDNA and DVPAE formed stable complexes with the T1R1/T1R3 receptor.•Acidic and aromatic residues were critical for peptide-receptor binding.

Key umami peptides were identified and evaluated for taste potency.

DFDNA, WYDY, and EYF showed strong umami activity with low taste thresholds.

DFDNA and DVPAE formed stable complexes with the T1R1/T1R3 receptor.

Acidic and aromatic residues were critical for peptide-receptor binding.

## Linked entities

- **Proteins:** TAS1R1 (taste 1 receptor member 1), TAS1R3 (taste 1 receptor member 3)
- **Chemicals:** monosodium glutamate (PubChem CID 23672308)

## Full-text entities

- **Chemicals:** monosodium glutamate (MESH:D012970), hydrogen (MESH:D006859), DFDNA (-)
- **Species:** Katsuwonus pelamis (bonito, species) [taxon 8226]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12874611/full.md

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Source: https://tomesphere.com/paper/PMC12874611