# A Chemoenzymatic Method To Systematically Quantify Core Fucosylation Stoichiometry of Glycoproteins and Reveal Its Roles in EMT and Embryonic Development

**Authors:** Senhan Xu, Xing Xu, Kejun Yin, Ronghu Wu

PMC · DOI: 10.1021/acs.analchem.5c05944 · 2026-01-19

## TL;DR

This paper introduces a new method to measure core fucosylation levels in glycoproteins and shows how these levels vary in different cell compartments and during development and cancer.

## Contribution

A chemoenzymatic method to systematically quantify core fucosylation stoichiometry in glycoproteins.

## Key findings

- Core fucosylation levels vary significantly across subcellular compartments, with the lowest in lysosomes and highest in the extracellular matrix.
- Glycosylation sites with more aromatic and hydrophobic residues show lower core fucosylation stoichiometry.
- Core fucosylation changes during EMT and is higher in embryonic kidney cells compared to kidney cancer cells.

## Abstract

Core fucosylation
of N-glycoproteins plays pivotal roles
in regulating
many cellular events such as receptor–ligand binding and cell
adhesion. Here, we developed a chemoenzymatic method combining selective
enrichment, enzymatic reactions, and multiplexed proteomics to systematically
quantify the core fucosylation stoichiometries of glycoproteins in
human cells. The results demonstrated that the core fucosylation stoichiometries
vary dramatically in different subcellular compartments with the lowest
in the lysosome and the highest in the extracellular matrix. Different
core fucosylation stoichiometries were observed among glycosylation
sites in various protein domains, and more aromatic and hydrophobic
residues neighboring glycosylation sites are associated with lower
core fucosylation stoichiometry. The method was applied to quantify
the core fucosylation stoichiometry changes in the epithelial-to-mesenchymal
transition (EMT), and some glycoproteins involved in extracellular
matrix organization and ligand recognition displayed marked stoichiometry
changes. Furthermore, the core fucosylation stoichiometries in embryonic
human kidney cells (HEK293T) were compared with those in kidney cancer
cells (A498). The average stoichiometry in HEK293T cells was much
higher than that of A498 cells, indicating that core fucosylation
may be a critical regulator in embryonic development. Without any
sample restriction, this method can be extensively applied to investigate
core fucosylation changes in various biological samples.

## Linked entities

- **Diseases:** kidney cancer (MONDO:0002367)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, LAMP2 (lysosome associated membrane protein 2) [NCBI Gene 3920] {aka CD107b, DND, LAMP-2, LAMPB, LGP-96, LGP110}, TMEM175 (transmembrane protein 175) [NCBI Gene 84286] {aka hTMEM175}, LAMB2 (laminin subunit beta 2) [NCBI Gene 3913] {aka LAMS, NPHS5, PIERS}, CDCP1 (CUB domain containing protein 1) [NCBI Gene 64866] {aka CD318, SIMA135, TRASK}, PLXNB2 (plexin B2) [NCBI Gene 23654] {aka MM1, Nbla00445, PLEXB2, dJ402G11.3, lncFAL}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, DBA [NCBI Gene 8378], TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, FUT8 (fucosyltransferase 8) [NCBI Gene 2530] {aka CDGF, CDGF1}, LAMP1 (lysosome associated membrane protein 1) [NCBI Gene 3916] {aka CD107a, LAMPA, LGP120}, SERPINH1 (serpin family H member 1) [NCBI Gene 871] {aka AsTP3, CBP1, CBP2, HSP47, OI10, PIG14}, LAMC1 (laminin subunit gamma 1) [NCBI Gene 3915] {aka LAMB2}, ITGA3 (integrin subunit alpha 3) [NCBI Gene 3675] {aka CD49C, FRP-2, GAP-B3, GAPB3, ILNEB, JEB7}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}
- **Diseases:** lung adenocarcinoma (MESH:D000077192), metastasis (MESH:D009362), emphysema (MESH:D004646), hypoxia (MESH:D000860), early death (MESH:D003643), liver diseases (MESH:D008107), cancer (MESH:D009369), growth retardation (MESH:D006130), kidney cancer (MESH:D007680), neurodegenerative diseases (MESH:D019636)
- **Chemicals:** CO2 (MESH:D002245), fucose (MESH:D005643), DTT (MESH:D004229), hydroxylamine (MESH:D019811), glycan (MESH:D011134), FA (MESH:D005492), luminal (MESH:D010634), HEPES (MESH:D006531), asparagine (MESH:D001216), Glycopeptides (MESH:D006020), H2O (MESH:D014867), NaCl (MESH:D012965), chloroform (MESH:D002725), DMSO (MESH:D004121), EDTA (MESH:D004492), lysine (MESH:D008239), N-glycans (-), methionine (MESH:D008715), ACN (MESH:C084683), boronic acid (MESH:D001897), P4 (MESH:C015586), oligosaccharides (MESH:D009844), dendrimer (MESH:D050091), disaccharide (MESH:D004187), iodoacetamide (MESH:D007460), TFA (MESH:D014269), GDP-fucose (MESH:D006154), GlcNAc (MESH:D000117), N (MESH:D009584), chitobiose (MESH:C032438), ammonium formate (MESH:C030544), methanol (MESH:D000432), glucose (MESH:D005947), hydrocortisone (MESH:D006854), HM (MESH:C100283), SDC (MESH:D003840)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Danio rerio (leopard danio, species) [taxon 7955]
- **Mutations:** A549 E, A549 M
- **Cell lines:** HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), T175 — Homo sapiens (Human), Undefined cell line type (CVCL_3806), A549 E and M — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_C3CC), MCF10A — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0598), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), MCF7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), A498 — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1056), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12874205/full.md

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Source: https://tomesphere.com/paper/PMC12874205