# Distribution and function of prokaryotes involved in mercury methylation, demethylation, and reduction in the western North Pacific Subtropical Gyre

**Authors:** Yuya Tada, Ryota Nakajima, Minoru Kitamura, Kohji Marumoto

PMC · DOI: 10.3389/fmicb.2025.1642479 · 2026-01-22

## TL;DR

This study explores how prokaryotes in the western North Pacific Subtropical Gyre contribute to mercury methylation, demethylation, and reduction, revealing key microbial players and their environmental roles.

## Contribution

The study is the first to simultaneously analyze mercury-related genes in open-ocean samples, linking microbial activity to mercury cycling.

## Key findings

- Methylmercury concentrations increased with depth, correlating with microbial respiration in mesopelagic layers.
- Nitrospina lineage was identified as dominant mercury methylators, linked to nitrogen cycling pathways.
- Diverse lineages with merB and merA genes suggest co-occurring demethylation and reduction processes.

## Abstract

Methylmercury (MeHg), a bioaccumulative neurotoxic heavy metal, substantially threatens environmental and human health. In natural environments, MeHg formation and degradation are primarily mediated by microorganisms containing hgcAB, merA, or merB genes. However, these genes have not been simultaneously analyzed in open-ocean samples. This study aimed to investigate the distribution and phylogeny of functional genes associated with mercury (Hg) methylation (hgcA and hgcB), demethylation (merB), and reduction (merA), as well as dissolved total Hg (THg) and MeHg concentrations in the western North Pacific Subtropical Gyre (WNPSG) using metagenomic analysis. Although THg levels varied across sampling sites, MeHg concentrations consistently increased with depth. A strong correlation between dissolved MeHg and apparent oxygen utilization indicated a link between Hg methylation and microbial respiration. hgcA, merB, and merA were predominantly detected at depths of 500–1,500 m, where MeHg concentrations peaked, indicating active microbial Hg speciation within mesopelagic layers. A higher abundance of hgcA than merB suggests that microbial Hg methylation may surpass demethylation in this region. Phylogenetic analyses of hgcAB identified the Nitrospina lineage as dominant Hg methylators. Metabolic pathway analyses of metagenome-assembled genomes (MAGs) showed that Nitrospina harboring hgcAB possesses the nitrite reductase pathway, suggesting a linkage between Hg methylation and nitrogen cycling. MAGs with hgcA affiliated with Myxococcota (Deltaproteobacteria) exhibited a strong association with sulfur cycling. Diverse lineages harboring merB and merA genes were identified, suggesting that MeHg demethylation and Hg(II) reduction likely co-occur. Methanogenesis pathways in some Alphaproteobacteria with merB or merA suggest a potential connection between methane production and MeHg degradation and Hg(II) reduction. These findings provide novel insights into the intricate interactions between microbial communities, functional gene distributions, and Hg biogeochemical cycling in the WNPSG.

## Linked entities

- **Genes:** hgcA (mercury methylation corrinoid protein HgcA) [NCBI Gene 3923451], hgcB (mercury methylation ferredoxin HgcB) [NCBI Gene 5143999], merB (organomercurial lyase) [NCBI Gene 7811495], merA (mercury(II) reductase) [NCBI Gene 1440767]
- **Chemicals:** methylmercury (PubChem CID 6860), mercury (PubChem CID 23931), nitrite (PubChem CID 946)
- **Species:** Nitrospina (taxon 35800), Myxococcota (taxon 2818505), Alphaproteobacteria (taxon 28211)

## Full-text entities

- **Diseases:** neurotoxic heavy metal (MESH:D000075322)
- **Chemicals:** sulfur (MESH:D013455), oxygen (MESH:D010100), Hg(II) (-), methane (MESH:D008697), Hg (MESH:D008628), nitrogen (MESH:D009584)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12874090/full.md

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Source: https://tomesphere.com/paper/PMC12874090