# Identification of a novel link connecting indole‐3‐acetamide with abscisic acid biosynthesis and signaling

**Authors:** José Moya‐Cuevas, Paloma Ortiz‐García, Adrián González Ortega‐Villaizán, Irene Viguera‐Leza, Andrés Pérez‐González, Javier Paz‐Ares, Carlos Alonso‐Blanco, Jesús Vicente‐Carbajosa, Stephan Pollmann

PMC · DOI: 10.1111/nph.70819 · 2025-12-08

## TL;DR

This study discovers how a plant compound called IAM interacts with another hormone, ABA, to affect root growth in Arabidopsis.

## Contribution

A novel connection between IAM and ABA signaling in plant root development is identified through GWAS and molecular analysis.

## Key findings

- GWAS identified genomic regions and candidate genes like ABA3 and GA2ox2 linked to IAM sensitivity in Arabidopsis.
- Molecular analysis shows IAM inhibits root growth by enhancing ABA production via ABA3.
- Experiments confirm IAM activates ABA signaling, revealing a new role for IAM in plant hormone interactions.

## Abstract

Plants orchestrate their developmental processes and responses to environmental stimuli through a sophisticated network of small signaling molecules, termed phytohormones. Among these, auxins are recognized for their role in promoting plant growth. However, indole‐3‐acetamide (IAM), an auxin precursor, has been observed to inhibit primary root elongation. The molecular mechanism underlying this inhibitory effect remains largely unexplored.A comprehensive genome‐wide association study (GWAS) conducted on a highly diverse collection of 166 wild Arabidopsis accessions from the Iberian Peninsula has identified several genomic regions associated with reduced IAM sensitivity under controlled in vitro conditions. This study highlighted ABA3 and GA2ox2 as possible candidate genes.Molecular and structural analyses suggest that the inhibition of primary root elongation induced by IAM is intricately associated with the enhanced production of abscisic acid (ABA) involving ABA3.Studies employing mutant and reporter lines have confirmed that IAM activates ABA signaling, thereby revealing a novel interaction between the auxin precursor IAM and ABA and suggesting an independent role for IAM as a signaling molecule in plant hormone crosstalk.

Plants orchestrate their developmental processes and responses to environmental stimuli through a sophisticated network of small signaling molecules, termed phytohormones. Among these, auxins are recognized for their role in promoting plant growth. However, indole‐3‐acetamide (IAM), an auxin precursor, has been observed to inhibit primary root elongation. The molecular mechanism underlying this inhibitory effect remains largely unexplored.

A comprehensive genome‐wide association study (GWAS) conducted on a highly diverse collection of 166 wild Arabidopsis accessions from the Iberian Peninsula has identified several genomic regions associated with reduced IAM sensitivity under controlled in vitro conditions. This study highlighted ABA3 and GA2ox2 as possible candidate genes.

Molecular and structural analyses suggest that the inhibition of primary root elongation induced by IAM is intricately associated with the enhanced production of abscisic acid (ABA) involving ABA3.

Studies employing mutant and reporter lines have confirmed that IAM activates ABA signaling, thereby revealing a novel interaction between the auxin precursor IAM and ABA and suggesting an independent role for IAM as a signaling molecule in plant hormone crosstalk.

## Linked entities

- **Genes:** ABA3 (molybdenum cofactor sulfurase (LOS5) (ABA3)) [NCBI Gene 838224], GA2OX2 (gibberellin 2-oxidase) [NCBI Gene 839883]
- **Chemicals:** indole-3-acetamide (PubChem CID 397), abscisic acid (PubChem CID 30583), ABA (PubChem CID 287291)
- **Species:** Arabidopsis (taxon 3701)

## Full-text entities

- **Genes:** ABA3 (molybdenum cofactor sulfurase (LOS5) (ABA3)) [NCBI Gene 838224] {aka ABA DEFICIENT 3, ACI2, ALTERED CHLOROPLAST IMPORT 2, ATABA3, AtLOS5, F19K19.13}, GA2OX2 (gibberellin 2-oxidase) [NCBI Gene 839883] {aka ATGA2OX2, GIBBERELLIN 2-OXIDASE 2, T1P2.6, T1P2_6, gibberellin 2-oxidase}
- **Chemicals:** auxin (MESH:D007210), IAM (MESH:C015950), ABA (MESH:D000040)
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12873522/full.md

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Source: https://tomesphere.com/paper/PMC12873522