# Finding balance: the dynamic interplay between H3K27me3 writers and erasers in regulating environmental plasticity and memory

**Authors:** Rory Osborne

PMC · DOI: 10.1111/nph.70815 · 2025-12-03

## TL;DR

This paper reviews how plants use a specific histone modification to adapt to environmental changes and remember past stress.

## Contribution

Highlights the role of H3K27me3 writers and erasers in stress adaptation and chromatin regulation beyond developmental control.

## Key findings

- H3K27me3 is regulated by writers and erasers to manage stress-responsive genes.
- The modification acts as a transcriptional memory mechanism for environmental adaptation.
- H3K27me3 dynamics are context-dependent and interact with other chromatin marks.

## Abstract

Subject to an ever‐changing world, plants must respond to harmful conditions and environmental fluctuations. Their evolutionary success can be attributed to their plasticity in both perceiving and integrating these variations to facilitate adaptation. The epigenetic control of gene expression through histone modification affords plants this flexibility by fine‐tuning gene expression and imprinting a transcriptional memory of specific conditions. Histone H3 lysine 27 trimethylation (H3K27me3) is a repressive modification held in balance across the genome by its writer, the Polycomb Repressive Complex 2, and its erasers, Jumonji‐class histone lysine demethylases. While extensively studied as a mark controlling cell‐fate identity and developmental transitions, recent efforts have shown that stress‐responsive loci are also regulated by H3K27me3. In this review, I explore the emerging roles of these H3K27me3 writers and erasers as central hubs in stress adaptation, highlighting their context‐dependent regulation and interplay with other chromatin marks. By examining H3K27me3 dynamics, I provide an updated perspective on its versatile functions beyond development, emphasising its relevance in enhancing plant adaptation and resilience to changing environments.

## Full-text entities

- **Genes:** FIE (Transducin/WD40 repeat-like superfamily protein) [NCBI Gene 821622] {aka FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE1, FIS3}, AT4G01880 (methyltransferase) [NCBI Gene 828223] {aka T7B11.14, T7B11_14}, TIR (toll/interleukin-1 receptor-like protein) [NCBI Gene 843624] {aka AtTN10, F3N23.13, F3N23_13, TIR-nucleotide binding site family 10, TN10, toll/interleukin-1 receptor-like}, MEA (SET domain-containing protein) [NCBI Gene 839422] {aka EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEDEA, SDG5}, CLF (SET domain-containing protein) [NCBI Gene 816870] {aka CURLY LEAF, F26B6.3, F26B6_3, ICU1, INCURVATA 1, SDG1}, TFL2 (uncharacterized protein) [NCBI Gene 831635] {aka AtLHP1, LHP1, LIKE HETEROCHROMATIN PROTEIN 1, MVA3.4, MVA3_4, TERMINAL FLOWER 2}, BRM (transcription regulatory protein SNF2) [NCBI Gene 819210] {aka ARABIDOPSIS THALIANA BRAHMA, ATBRM, BRAHMA, CHA2, CHR2, CHROMATIN REMODELING 2}, ATX1 (homolog of anti-oxidant 1) [NCBI Gene 842940] {aka ATATX1, T6J19.6, T6J19_6, homolog of anti-oxidant 1}, ADH1 (alcohol dehydrogenase 1) [NCBI Gene 844047] {aka ADH, ALCOHOL DEHYDROGENASE, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH, ATADH1, F22K20.19}, TCP24 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24) [NCBI Gene 839901] {aka ATTCP24, F12P21.11, F12P21_11, TEOSINTE BRANCHED 1, and PCF family 24, cycloidea}, REF6 (relative of early flowering 6) [NCBI Gene 824002] {aka JMJ12, Jumonji domain-containing protein 12, relative of early flowering 6}, ELF6 (Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein) [NCBI Gene 830303] {aka EARLY FLOWERING 6, F21E1.160, F21E1_160}, VRN5 (Fibronectin type III domain-containing protein) [NCBI Gene 822034] {aka VERNALIZATION 5, VIL1, VIN3-LIKE 1}, PHYB (phytochrome B) [NCBI Gene 816394] {aka HY3, MSF3.17, MSF3_17, OOP1, OUT OF PHASE 1, PHYTOCHROME B}, MYC2 (Basic helix-loop-helix (bHLH) DNA-binding family protein) [NCBI Gene 840158] {aka ATMYC2, F6N18.4, F6N18_4, JAI1, JASMONATE INSENSITIVE 1, JIN1}, JMJD5 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) [NCBI Gene 821629] {aka JMJ30, Jumonji C domain-containing protein 30, jumonji domain containing 5}, PIF4 (phytochrome interacting factor 4) [NCBI Gene 818903] {aka AtPIF4, MFL8.13, MFL8_13, SRL2, phytochrome interacting factor 4}, CLQTL1 (cholesterol-lowering factor) [NCBI Gene 54501] {aka CLF}, FIS2 (VEFS-Box of polycomb protein) [NCBI Gene 818136] {aka FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, FERTILIZATION-INDEPENDENT SEED 2 PROTEIN, FIE2, T20F21.14, T20F21_14}, PIF7 (phytochrome-interacting factor7) [NCBI Gene 836248] {aka MFB13.4, MFB13_4, phytochrome-interacting factor7}, HSP21 (heat shock protein 21) [NCBI Gene 828881] {aka T29A15.160, T29A15_160, heat shock protein 21}, FLC (K-box region and MADS-box transcription factor family protein) [NCBI Gene 830878] {aka AGAMOUS-like 25, AGL25, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F, MADS BOX PROTEIN FLOWERING LOCUS F}, HSFA2 (heat shock transcription factor A2) [NCBI Gene 817155] {aka ATHSFA2, T19L18.4, T19L18_4, heat shock transcription factor A2}, SCN3A (sodium voltage-gated channel alpha subunit 3) [NCBI Gene 6328] {aka DEE62, EIEE62, FFEVF4, NAC3, Nav1.3}, GA20OX2 (gibberellin 20 oxidase 2) [NCBI Gene 835256] {aka AT2353, ATGA20OX2, MIO24.5, MIO24_5, gibberellin 20 oxidase 2}, SWN (SET domain-containing protein) [NCBI Gene 828165] {aka EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, T10M13.3, T10M13_3}, COR15A (cold-regulated 15a) [NCBI Gene 818854] {aka AtCOR15A, COR15, F14N22.19, F14N22_19, cold-regulated 15a}, CESA6 (cellulose synthase 6) [NCBI Gene 836595] {aka E112, ISOXABEN RESISTANT 2, IXR2, MVP7.7, MVP7_7, PRC1}, IAA19 (indole-3-acetic acid inducible 19) [NCBI Gene 820793] {aka MASSUGU 2, MJK13.22, MSG2, indole-3-acetic acid inducible 19}, AT3G45880 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) [NCBI Gene 823731] {aka JMJ32, JUMONJI 32}, PKL (chromatin remodeling factor CHD3 (PICKLE)) [NCBI Gene 817055] {aka AT2G25170.1, CHD3, CHD3 PROTEIN, CHR6, CKH2, CYTOKININ-HYPERSENSITIVE 2}, HB-2 (homeobox protein 2) [NCBI Gene 827384] {aka ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, ATHB-2, ATHB2, DL4415W, FCAALL.101, HAT4}, EMF2 (VEFS-Box of polycomb protein) [NCBI Gene 835198] {aka AT5G51240, AtEMF2, CYR1, CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, MWD22.18}, VRN2 (VEFS-Box of polycomb protein) [NCBI Gene 827392] {aka REDUCED VERNALIZATION RESPONSE 2}, HAI2 (highly ABA-induced PP2C protein 2) [NCBI Gene 837255] {aka AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, F22G5.22, F22G5_22, HON}
- **Diseases:** infection (MESH:D007239), hyperactivity (MESH:D006948), hypoxic (MESH:D002534), hypoxia (MESH:D000860), Pst (MESH:D011552), hypersensitivity (MESH:D004342)
- **Chemicals:** ABA (MESH:D000040), glucose (MESH:D005947), salt (MESH:D012492), salicylic acid (MESH:D020156), glucosinolate (MESH:D005961), lipid (MESH:D008055), jasmonic acid (MESH:C011006), IAA29 (-), O2 (MESH:D010100), SA (MESH:D000077145), auxin (MESH:D007210), CO2 (MESH:D002245), ethylene (MESH:C036216), GA (MESH:C007842)
- **Species:** Pseudomonas syringae pv. tomato str. DC3000 (strain) [taxon 223283], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Turnip mosaic virus (no rank) [taxon 12230], Enterobacteria phage ST (no rank) [taxon 12354], Xanthomonas oryzae (species) [taxon 347], Tomato golden mosaic virus (no rank) [taxon 10831], Mus musculus (house mouse, species) [taxon 10090], Drosophila melanogaster (fruit fly, species) [taxon 7227], Solanum tuberosum (potatoes, species) [taxon 4113], Glycine max (soybean, species) [taxon 3847], Pyricularia oryzae (rice blast fungus, species) [taxon 318829]

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12873518/full.md

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Source: https://tomesphere.com/paper/PMC12873518