# Polygonum cognatum Extract: Multitarget Anti‐inflammatory, Antidiabetic, and Epigenetic Modulation Properties

**Authors:** Serhat Karaman, Yakup Budak, Elif Aktürk Bozdemir

PMC · DOI: 10.1002/open.202500505 · 2026-02-04

## TL;DR

This study explores the medicinal properties of Polygonum cognatum, finding it has strong antioxidant, anti-inflammatory, antidiabetic, and epigenetic effects, with a rich profile of active compounds.

## Contribution

The first demonstration of histone deacetylase inhibition and epigenetic modulation by Polygonum cognatum, along with detailed phytochemical and multitarget biological profiling.

## Key findings

- Ethanol extract of Polygonum cognatum showed the highest phenolic diversity and content.
- The extract exhibited potent antioxidant, anti-inflammatory, antidiabetic, and antimicrobial activities.
- Histone deacetylase inhibitory activity was identified for the first time in Polygonum cognatum.

## Abstract

Polygonum cognatum (Madımak) is a plant traditionally consumed for medicinal purposes in Turkey. Unlike previous studies examining samples from different regions and seasons, this research presents the first comprehensive characterization of P. cognatum collected from the Central Black Sea Region (Tokat, 40°01′02″N, 36°28′15″E; 1210 m altitude) during the vegetative growth phase (June 2024), where geographical origin and collection time significantly influence secondary metabolite profiles. This study evaluates the phytochemical profile and multitarget biological activities of P. cognatum extracts obtained using solvents of different polarities (hexane, ethanol, and water). Advanced analytical techniques (liquid chromatography–tandem mass spectrometry, high‐performance liquid chromatography‐diode array detector, and gas chromatography‐mass spectrometry) identified 28 phenolic compounds, with the ethanol extract showing the highest diversity (24 compounds) and total phenolic content (78.6 ± 2.3 mg GAE/g). Compounds identified for the first time in P. cognatum include isoquercetin‐3‐O‐rhamnoside, apigenin‐7‐O‐glucoside, and luteolin‐4′‐O‐glucoside. The ethanol extract demonstrated superior multitarget bioactivity: potent antioxidant activity ( 2,2‐diphenyl‐1‐picrylhydrazyl (DPPH) IC50: 76.4 ± 2.1 μg/mL), moderate but selective anti‐inflammatory effects (COX‐2 IC50: 145.3 ± 5.2 μg/mL; selectivity index: 2.06, indicating preferential COX‐2 inhibition over COX‐1) and significant antidiabetic potential (α‐amylase IC50: 89.3 ± 3.1 μg/mL; α‐glucosidase IC50: 76.8 ± 2.9 μg/mL), and antimicrobial activity (MIC: 62.5 μg/mL against S. aureus). Notably, this study demonstrates for the first time the histone deacetylase (HDAC) inhibitory activity of P. cognatum (IC50: 92.4 ± 3.8 μg/mL), revealing novel epigenetic modulation properties. Molecular docking studies showed strong correlations between binding affinities and experimental IC50 values (r = −0.87 to −0.91; p < 0.01). Cytotoxicity evaluation showed favorable safety profiles (CC50 > 500 μg/mL). Docking, IC50, and compositional data consistently indicate that quercetin, rutin, chlorogenic acid, and kaempferol are key contributors to the observed antioxidant, antidiabetic, anti‐inflammatory, and HDAC inhibitory effects. These findings establish P. cognatum as a promising multitarget therapeutic agent with novel epigenetic regulatory mechanisms, supporting its potential development for inflammatory, metabolic, and epigenetic‐related disorders.

Polygonum cognatum extracts exhibit strong antioxidant, anti‐inflammatory, antidiabetic, and antimicrobial activities. This study demonstrates, for the first time, histone deacetylase inhibitory activity, revealing epigenetic modulation potential. A rich phenolic profile, including quercetin, kaempferol, and chlorogenic acid, underlies these multitarget effects. Molecular docking analyses show strong correlation with experimental data, providing mechanistic insight.”© 2026 WILEY‐VCH GmbH

## Linked entities

- **Proteins:** COX2 (cytochrome c oxidase subunit II), COX1 (cytochrome c oxidase subunit I), HDAC9 (histone deacetylase 9)
- **Chemicals:** apigenin-7-O-glucoside (PubChem CID 5280704), luteolin-4′-O-glucoside (PubChem CID 5319116), quercetin (PubChem CID 5280343), rutin (PubChem CID 5280805), chlorogenic acid (PubChem CID 1794427), kaempferol (PubChem CID 5280863)
- **Diseases:** diabetes (MONDO:0005015)
- **Species:** Polygonum cognatum (taxon 487757)

## Full-text entities

- **Genes:** COX-2 [NCBI Gene 5848004], IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, SI (sucrase-isomaltase) [NCBI Gene 6476], COX-1 [NCBI Gene 5848012], HDAC8 (histone deacetylase 8) [NCBI Gene 55869] {aka CDA07, CDLS5, HD8, HDACL1, KDAC8, MRXS6}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, COX1 (cytochrome c oxidase subunit I) [NCBI Gene 4512] {aka COI, MTCO1}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, COX8A (cytochrome c oxidase subunit 8A) [NCBI Gene 1351] {aka COX, COX8, COX8-2, COX8L, MC4DN15, VIII}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}
- **Diseases:** type 2 diabetes (MESH:D003924), infectious diseases (MESH:D003141), hepatoma (MESH:D006528), cancer (MESH:D009369), microbial infections (MESH:D015163), Cytotoxic (MESH:D064420), inflammatory bowel disease (MESH:D015212), abdominal discomfort (MESH:D000007), reproductive toxicity (MESH:D060737), neurodegenerative conditions (MESH:D019636), bacterial infection (MESH:D001424), skin disorders (MESH:D012871), arthritis (MESH:D001168), flatulence (MESH:D005414), endothelial dysfunction (MESH:D014652), dyslipidemia (MESH:D050171), metabolic diseases (MESH:D008659), cardiovascular inflammation (MESH:D007249), diarrhea (MESH:D003967), metabolic syndrome (MESH:D024821), insulin resistance (MESH:D007333), gastrointestinal (MESH:D005767), proinflammatory cytokines (MESH:D000080424), diabetes (MESH:D003920), atherosclerosis (MESH:D050197), inflammatory, metabolic, infectious, and epigenetic-related disorders (MESH:D000094025), cardiovascular disease (MESH:D002318)
- **Chemicals:** p-nitrophenyl-alpha-D-glucopyranoside (MESH:C019502), potassium persulfate (MESH:C009007), Na2CO3 (MESH:C005686), linoleic acid (MESH:D019787), polyphenols (MESH:D059808), acetonitrile (MESH:C032159), Fe3+ (-), p-coumaric acid (MESH:C495469), butylated hydroxyanisole (MESH:D002083), Acarbose (MESH:D020909), Diclofenac sodium (MESH:D004008), Kaempferol (MESH:C006552), metal (MESH:D008670), zinc (MESH:D015032), rutinose (MESH:C539209), Ascorbic acid (MESH:D001205), Rutin (MESH:D012431), AlCl3 (MESH:D000077410), NaOH (MESH:D012972), alpha-linolenic acid (MESH:D017962), catechol (MESH:C034221), arachidonic acid (MESH:D016718), 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (MESH:C002502), NO (MESH:D009614), caffeic acid (MESH:C040048), potassium ferricyanide (MESH:C028033), trichloroacetic acid (MESH:D014238), fatty acids (MESH:D005227), luteolin-4'-O-glucoside (MESH:C120646), caffeoyl-quinic acid (MESH:C472707), catechin (MESH:D002392), SAHA (MESH:D000077337), hydroxycinnamic acid (MESH:D003373), methanol (MESH:D000432), glucose (MESH:D005947), prostaglandin (MESH:D011453), formic acid (MESH:C030544), Prussian blue (MESH:C000170), blood glucose (MESH:D001786), fluconazole (MESH:D015725), Hexane (MESH:D006586), quinic acid (MESH:D011801), 3,5-dinitrosalicylic acid (MESH:C027011), agar (MESH:D000362), heme (MESH:D006418), MTT (MESH:C070243), celecoxib (MESH:D000068579), CO2 (MESH:D002245), NaNO2 (MESH:D012977), phospholipid (MESH:D010743), Flavonoid (MESH:D005419), lipopolysaccharides (MESH:D008070), Water (MESH:D014867), beta-sitosterol (MESH:C025473), gallic acid (MESH:D005707), hexadecanoic acid (MESH:D019308), hydrogen (MESH:D006859), ferulic acid (MESH:C004999), Ethanol (MESH:D000431), streptomycin (MESH:D013307)
- **Species:** Staphylococcus aureus (species) [taxon 1280], Polygonum cognatum (species) [taxon 487757], Bacillus subtilis (species) [taxon 1423], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Pseudomonas aeruginosa (species) [taxon 287], Homo sapiens (human, species) [taxon 9606], Candida albicans (species) [taxon 5476], Polygonum (genus) [taxon 46786], Fungi (kingdom) [taxon 4751], Persicaria (genus) [taxon 61508], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Escherichia coli (E. coli, species) [taxon 562], Meleagris gallopavo (common turkey, species) [taxon 9103]
- **Cell lines:** ATCC HB-8065 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), Sf9 — Spodoptera frugiperda (Fall armyworm), Spontaneously immortalized cell line (CVCL_0549), RAW 264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027)

## Figures

15 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12873506/full.md

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Source: https://tomesphere.com/paper/PMC12873506