# Disturbances of paraventricular thalamic nucleus neurons in bipolar disorder revealed by single-nucleus analysis

**Authors:** Masaki Nishioka, Mie Sakashita-Kubota, Kouichirou Iijima, Yukako Hasegawa, Mizuho Ishiwata, Kaito Takase, Ryuya Ichikawa, Naguib Mechawar, Gustavo Turecki, Tadafumi Kato

PMC · DOI: 10.1038/s41467-025-68094-5 · 2026-01-07

## TL;DR

This study identifies significant changes in paraventricular thalamic neurons in bipolar disorder patients, suggesting a key role in the disease's pathology.

## Contribution

The study reveals novel transcriptional abnormalities in the paraventricular thalamic nucleus specific to bipolar disorder.

## Key findings

- PVT neurons showed the largest number of differentially expressed genes and a ~50% reduction in cell count in BD patients.
- Synaptic and ion channel-related genes like SHISA9, CACNA1C, and KCNQ3 were significantly downregulated in BD PVT neurons.
- Disrupted interactions between thalamic excitatory neurons and microglia were observed in bipolar disorder.

## Abstract

Bipolar disorder (BD) is a major global health burden, and its treatment challenges highlight the need for pathology-based therapeutic development. Emerging evidence suggests that the thalamus, particularly the paraventricular thalamic nucleus (PVT), is a key region in mood regulation. We performed single-nucleus RNA sequencing on 82 thalamic and cortical samples from 21 patients with BD and 20 controls to compare transcriptional pathology. PVT neurons showed the most striking abnormalities, including the largest number of differentially expressed genes and ~50% fewer cells in BD, whereas cortical alterations were comparatively modest. PVT neurons exhibited marked downregulation of synaptic and ion channel-related genes such as SHISA9, CACNA1C, and KCNQ3, which are linked to BD risk and serve as central nodes in downregulated networks. We also observed disrupted interactions between thalamic excitatory neurons and microglia. Overall, PVT neurons emerge as a central pathological substrate and a promising diagnostic and therapeutic target in BD.

The pathological mechanisms of bipolar disorder remain largely unknown. Here, authors show marked loss and synaptic gene disruption in paraventricular thalamic neurons by single-nucleus analysis of human brains, highlighting this deep-brain region.

## Linked entities

- **Genes:** SHISA9 (shisa family member 9) [NCBI Gene 729993], CACNA1C (calcium voltage-gated channel subunit alpha1 C) [NCBI Gene 775], KCNQ3 (potassium voltage-gated channel subfamily Q member 3) [NCBI Gene 3786]
- **Diseases:** bipolar disorder (MONDO:0004985)

## Full-text entities

- **Genes:** SHISA9 (shisa family member 9) [NCBI Gene 729993] {aka CKAMP44}, KCNQ3 (potassium voltage-gated channel subfamily Q member 3) [NCBI Gene 3786] {aka BFNC2, EBN2, KV7.3}, CACNA1C (calcium voltage-gated channel subunit alpha1 C) [NCBI Gene 775] {aka CACH2, CACN2, CACNA1C-IT2, CACNL1A1, CCHL1A1, CaV1.2}
- **Diseases:** BD (MESH:D001714)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12873406/full.md

---
Source: https://tomesphere.com/paper/PMC12873406