# Identification of CTHRC1 as a novel candidate for neurodevelopmental disorders

**Authors:** Jie Xu, Yuan He, Zhao Li, Wenrong Zhou, Chunjian Huang, Lu Lu, Akhilesh K. Bajpai, Min Li

PMC · DOI: 10.3389/fnagi.2026.1737003 · 2026-01-22

## TL;DR

CTHRC1 is a newly identified gene linked to cognitive function and Alzheimer's disease, showing potential as a therapeutic target.

## Contribution

CTHRC1 is newly identified as a candidate gene for neurodevelopmental and neurodegenerative disorders.

## Key findings

- CTHRC1 is upregulated in Alzheimer's patients and 5xFAD mice, with significant statistical support.
- CTHRC1 expression correlates with 22 cognition-related phenotypes and AD-related traits through genetic and phenotypic analyses.
- CTHRC1 interacts with key AD genes and modulates tau degradation when overexpressed in cells.

## Abstract

Cognitive dysfunction affects over 50 million individuals worldwide, with Alzheimer’s disease (AD) representing two-thirds of cases. We identified CTHRC1 (Collagen Triple Helix Repeat Containing 1) as a novel candidate associated with cognitive function and neurodegeneration.

Human proteomic analysis revealed CTHRC1 as highly upregulated in AD patients (~5-fold increase, adj. p = 0.05), with corresponding elevation in 5xFAD mice. Single-cell RNA sequencing showed predominant astrocyte and oligodendrocyte progenitor expression. Using BXD mice, systems genetics analysis revealed associations between hippocampal CTHRC1 expression and 22 cognition-related phenotypes. PheWAS, ePheWAS, and GWAS analyses confirmed links to nervous system and AD-related traits.

eQTL mapping identified CTHRC1 as cis-regulated in hippocampus, and correlating with protein transport, transcription, and neurodegeneration pathways. Network analysis revealed 17 direct interactors, including key neurodegeneration genes (BACE1, NEFL, IRS1, VDAC1, SNCAIP) connecting CTHRC1 to core AD pathways (APP, MAPT, APOE, PSEN1/2). CTHRC1 overexpression in SH-SY5Y cells promoted tau degradation and modulated network partner expression.

CTHRC1 represents a central hub in cognitive function networks, suggesting therapeutic potential for neurodegenerative disorders.

## Linked entities

- **Genes:** CTHRC1 (collagen triple helix repeat containing 1) [NCBI Gene 115908], BACE1 (beta-secretase 1) [NCBI Gene 23621], NEFL (neurofilament light chain) [NCBI Gene 4747], IRS1 (insulin receptor substrate 1) [NCBI Gene 3667], VDAC1 (voltage dependent anion channel 1) [NCBI Gene 7416], SNCAIP (synuclein alpha interacting protein) [NCBI Gene 9627], APP (amyloid beta precursor protein) [NCBI Gene 351], MAPT (microtubule associated protein tau) [NCBI Gene 4137], APOE (apolipoprotein E) [NCBI Gene 348], PSEN1 (presenilin 1) [NCBI Gene 5663], PSEN2 (presenilin 2) [NCBI Gene 5664]
- **Diseases:** Alzheimer’s disease (MONDO:0004975), AD (MONDO:0004975)
- **Species:** Mus musculus (taxon 10090), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** BACE1 (beta-secretase 1) [NCBI Gene 23621] {aka ASP2, BACE, HSPC104}, IRS1 (insulin receptor substrate 1) [NCBI Gene 3667] {aka HIRS-1}, APOE (apolipoprotein E) [NCBI Gene 348] {aka AD2, APO-E, ApoE4, LDLCQ5, LPG}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, VDAC1 (voltage dependent anion channel 1) [NCBI Gene 7416] {aka PORIN, VDAC-1}, NEFL (neurofilament light chain) [NCBI Gene 4747] {aka CMT1F, CMT2E, CMTDIG, NF-L, NF68, NFL}, SNCAIP (synuclein alpha interacting protein) [NCBI Gene 9627] {aka SYPH1, Sph1}, CTHRC1 (collagen triple helix repeat containing 1) [NCBI Gene 115908]
- **Diseases:** Cognitive dysfunction (MESH:D003072), neurodevelopmental disorders (MESH:D002658), AD (MESH:D000544), neurodegeneration (MESH:D019636)
- **Chemicals:** 5xFAD (-)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12872770/full.md

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Source: https://tomesphere.com/paper/PMC12872770