# Comprehensive analysis of COLGALT1 in tumor microenvironment regulation and prognosis of clear cell renal cell carcinoma

**Authors:** Yicheng Guo, Bin Wang, Guixin Ding, Yanwei Zhang, Yini Wang, Xiaohong Ma, Jitao Wu

PMC · DOI: 10.1007/s10238-026-02041-6 · 2026-02-02

## TL;DR

This study explores the role of COLGALT1 in clear cell renal cell carcinoma, finding it linked to immune cell infiltration and a potential biomarker for prognosis.

## Contribution

The study identifies COLGALT1 as a novel prognostic biomarker and potential therapeutic target in ccRCC.

## Key findings

- COLGALT1 expression is significantly upregulated in ccRCC at both mRNA and protein levels.
- COLGALT1 correlates with infiltration of monocytes, T helper 2 cells, macrophages, regulatory T cells, and natural killer cells.
- COLGALT1 is strongly associated with M2 macrophage markers, indicating a role in immunosuppressive tumor environments.

## Abstract

Collagen galactosyltransferase 1 (COLGALT1), a key enzyme involved in collagen post-translational modification, has been implicated in extracellular matrix remodeling across multiple cancer types, yet its prognostic significance and relationship with the tumor immune microenvironment in clear cell renal cell carcinoma (ccRCC) remain unclear. In this study, we analyzed multi-omics datasets from public repositories to assess COLGALT1 expression patterns, clinical relevance, and prognostic value in ccRCC. Quantitative real-time PCR was performed to validate its expression in renal cancer cell lines and normal renal tubular epithelial cells. Immune infiltration profiles were characterized using multiple computational algorithms, and a competing endogenous RNA network was constructed to explore regulatory mechanisms. Our results demonstrated that COLGALT1 expression was significantly upregulated in ccRCC at both mRNA and protein levels and was positively associated with the infiltration of monocytes, T helper 2 cells, macrophages, regulatory T cells, and natural killer cells. Notably, COLGALT1 expression correlated strongly with markers of M2 macrophages, suggesting a role in promoting an immunosuppressive tumor microenvironment. These findings identify COLGALT1 as a novel prognostic biomarker and potential therapeutic target in ccRCC, highlighting its contribution to extracellular matrix remodeling and immune regulation.

The online version contains supplementary material available at 10.1007/s10238-026-02041-6.

## Linked entities

- **Genes:** COLGALT1 (collagen beta(1-O)galactosyltransferase 1) [NCBI Gene 79709]
- **Diseases:** clear cell renal cell carcinoma (MONDO:0005005), ccRCC (MONDO:0007763)

## Full-text entities

- **Genes:** CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, VSIG4 (V-set and immunoglobulin domain containing 4) [NCBI Gene 11326] {aka CRIg, Z39IG}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, CXCR5 (C-X-C motif chemokine receptor 5) [NCBI Gene 643] {aka BLR1, CD185, MDR15}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, CCR1 (C-C motif chemokine receptor 1) [NCBI Gene 1230] {aka CD191, CKR-1, CKR1, CMKBR1, HM145, MIP1aR}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, CSF1R (colony stimulating factor 1 receptor) [NCBI Gene 1436] {aka BANDDOS, C-FMS, CD115, CSF-1R, CSFR, FIM2}, CXCL5 (C-X-C motif chemokine ligand 5) [NCBI Gene 6374] {aka ENA-78, SCYB5}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, TNFRSF8 (TNF receptor superfamily member 8) [NCBI Gene 943] {aka CD30, D1S166E, Ki-1}, COLGALT1 (collagen beta(1-O)galactosyltransferase 1) [NCBI Gene 79709] {aka BSVD3, ColGalT 1, GLT25D1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, LGALS9 (galectin 9) [NCBI Gene 3965] {aka HUAT, LGALS9A}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, MS4A4A (membrane spanning 4-domains A4A) [NCBI Gene 51338] {aka 4SPAN1, CD20-L1, CD20L1, HDCME31P, MS4A4, MS4A7}, CXCL16 (C-X-C motif chemokine ligand 16) [NCBI Gene 58191] {aka CXCLG16, SR-PSOX, SRPSOX}, NELFCD (negative elongation factor complex member C/D) [NCBI Gene 51497] {aka HSPC130, NELF-C, NELF-D, TH1, TH1L}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, MIR502 (microRNA 502) [NCBI Gene 574504] {aka MIRN502, hsa-mir-502, mir-502}, CCL26 (C-C motif chemokine ligand 26) [NCBI Gene 10344] {aka IMAC, MIP-4a, MIP-4alpha, SCYA26, TSC-1}, SLC16A1-AS1 (SLC16A1 antisense RNA 1) [NCBI Gene 100506392] {aka LINC01357}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, CCR8 (C-C motif chemokine receptor 8) [NCBI Gene 1237] {aka CC-CKR-8, CCR-8, CDw198, CKRL1, CMKBR8, CMKBRL2}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, AGER (advanced glycosylation end-product specific receptor) [NCBI Gene 177] {aka RAGE, SCARJ1, sRAGE}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, RENBP (renin binding protein) [NCBI Gene 5973] {aka RBP, RNBP}, CD276 (CD276 molecule) [NCBI Gene 80381] {aka 4Ig-B7-H3, B7-H3, B7H3, B7RP-2}
- **Diseases:** inflammatory (MESH:D007249), breast cancer (MESH:D001943), tumorigenesis (MESH:D063646), ovarian and breast cancers (MESH:D061325), Clear cell renal cell carcinoma (MESH:D002292), diabetic complications (MESH:D048909), metastases (MESH:D009362), cholangiocarcinoma (MESH:D018281), Tumor (MESH:D009369), kidney cancer (MESH:D007680), mitochondrial dysfunction (MESH:D028361), colon adenocarcinoma (MESH:D003110)
- **Chemicals:** Gemcitabine (MESH:D000093542), Dasatinib (MESH:D000069439), Vinblastine (MESH:D014747), Fluorouracil (MESH:D005472), Bortezomib (MESH:D000069286), Tamoxifen (MESH:D013629), Paclitaxel (MESH:D017239), 3U (-), Axitinib (MESH:D000077784), TRIzol (MESH:C411644), nitrogen (MESH:D009584)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** 769-P — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1050), ACHN — Homo sapiens (Human), Papillary renal cell carcinoma, Cancer cell line (CVCL_1067), Caki — Homo sapiens (Human), Clear cell renal cell carcinoma, Cancer cell line (CVCL_0234), 786-O — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1051)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12872700/full.md

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Source: https://tomesphere.com/paper/PMC12872700